Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1237 ATGGATTCTGCTTCATTCCCTCGCTTCTTAGTCTCCCATGTCATCTACAGCTCAAGCTTGCATCGCTCTTCCTTGACAATTCAGAGTACAAGAAATGGCCTGTGGAAGAAAAGATTATGTGGAATTGGGATTTGTGAAGTTGGAATTGGAAACTCATACGGTGAAAGCAGCATGAAGAAGAACGAGAATGGGTCAGTGTTTGGTTCGATGGACGAGTCAGCTGCTGCAACATTTGGAACATTAGACGCAGAAATCACACCAGAAACTGCCGATTTCTTTGTGAGTGATGCAGAAGGTGATCCAGATTGCCCCTCCAAAGGTTACTCTTCGATTGAGCAGGCACTTAATGCACTACGCCAAGGAAAGTTTGTGATTGTGGTAGATGATGAAAATGGTGAAATTGAAGGGAATCTTGTAATGGCGGCATCGATGACAAGTCCAGAGCATGTGGCCTTCATGATAAAGCACGGATCAGGGATTGTTTCTGTGGGCATGAAGGATGAGGATCTTCAAAGACTGAAGCTTCCTCTTATGTCACCTGATTCTGAAATTGAGGATTCTTCTGCACCAACTTTTACTATCACTGTGGATGCAAAAGTTGGGACTTCCACGGGCGTATCAGCTGCAGATAGAGCAAAGACAGTGATTGCTCTGTCATCTCCGGACTCAAGACCAGAAGATTTCAGAAAGCCAGGTCATGTGTTTCCCCTCAAATACAGAAACGGTGGTGTTCTCAGAAGAGCAGCTCACACTGAAGCTTCTGTAGATTTGGTCTCCATGGCTGGCTTGAGGCCCGTCTCTCTTCTTTCAGCTCTTGTCGATGCAACCGATGGTTCTATGGCTCCCTTACCTCTTCTCAAAAACTTGGCATTACAACACGACATACCAGTTGTCTCGATAACTGATCTGATAAGGTACCGGAGAAAGCGAGAAAAACTGGTTGAAAGAACTAGCTTCTCACGCCTCCCTACTAAATGGGGCCTATTTCAAGCATATTGCTATCACTCTAAGTTGGATGGAACAGAACATGTGGCTATTGTGAAGGGAGAGATAGGAGATGGGCAAGATGTGTTAGTGAGAGTGCATTCAGAGTGCTTAACGGGGGATATATTTGCATCAGCTCGATGTGATTGTGGGAACCAGTTAGAGTTGGCTATGAAGTTAGTTGAAGAAGCTGGGAGAGGAGTAATTGTGTATCTTCGAGGTCATGAAGGAAGAGGAATAGGACTTGGTCACAAATTGAAGGCCTATAACTTGCAGGATCAAGGTCGTGACACTGTTCAAGCCAACTTAGACCTTGGCTTAGCCGTTGATGCTCGTGAGTATGGCATTGGTGCCCAGATTCTGAGGGACTTAGGAGTTCGAACAATGAGGTTAATGACGAATAACCCGGCAAAGTTCGTTGGACTGAGAGGGTATGGTTTGGCAGTGATAGGGCGTGTTCCTGTGTTGACACCAATTACTGAAGAAAACAAGAGGTACCTGGAAACGAAGCGGACCAAAATGGGTCATGTGTATGGTTCTGATATACAATCACCATTAGGTGGACTCATCAATCCTAGTGTAAATAACACAAACTTACCCGACAAAGAAAGTTGTGAAGATTGTAATCATTTTGCTACTGTAACGTCTCCAGTCACAGGATTCTTTTCTTTTATCTGGGTCGAGTATCATTTTCAGCAACCCATGGCTCCGGCTAAAGTTGATAGTTCGAAGAAAACTGATCCGAAGGCGCAGGCCTTGAAAACTGCTAAAGCAGTCAAGTCAGGCCCTGCCTTAAAAAAGAAGGCCAAGAAAATCAGAACCTCCGTTACATTCCATAGGCCAAAGACTTTACAAAAGGCTAGGAATCCCAAATACCCACGTATTAGTGCGACTCCAAGGAATAAACTCGATCATTATCAAATTTTGAAGTACCCTCTCACTACTGAGTCTGCCATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACCTACGTGCTGACAAGAAGAAGATAAAGGATGCGGTGAAGAAGATGTATGACATTCAGGCCAGGAAAGTAAATACCTTGATCAGGCCCGATGGCACCAAGAAGGCATATGTTAGGCTGACACCTGATTATGATGCATTGGACGTAGCAAACAAAATTGGGATTATCTAA 2151 0.4426 MDSASFPRFLVSHVIYSSSLHRSSLTIQSTRNGLWKKRLCGIGICEVGIGNSYGESSMKKNENGSVFGSMDESAAATFGTLDAEITPETADFFVSDAEGDPDCPSKGYSSIEQALNALRQGKFVIVVDDENGEIEGNLVMAASMTSPEHVAFMIKHGSGIVSVGMKDEDLQRLKLPLMSPDSEIEDSSAPTFTITVDAKVGTSTGVSAADRAKTVIALSSPDSRPEDFRKPGHVFPLKYRNGGVLRRAAHTEASVDLVSMAGLRPVSLLSALVDATDGSMAPLPLLKNLALQHDIPVVSITDLIRYRRKREKLVERTSFSRLPTKWGLFQAYCYHSKLDGTEHVAIVKGEIGDGQDVLVRVHSECLTGDIFASARCDCGNQLELAMKLVEEAGRGVIVYLRGHEGRGIGLGHKLKAYNLQDQGRDTVQANLDLGLAVDAREYGIGAQILRDLGVRTMRLMTNNPAKFVGLRGYGLAVIGRVPVLTPITEENKRYLETKRTKMGHVYGSDIQSPLGGLINPSVNNTNLPDKESCEDCNHFATVTSPVTGFFSFIWVEYHFQQPMAPAKVDSSKKTDPKAQALKTAKAVKSGPALKKKAKKIRTSVTFHRPKTLQKARNPKYPRISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQARKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1237 716 CDD GTP_cyclohydro2 313 504 IPR000926 GO:0003935|GO:0009231
Lele30g1237 716 SUPERFAMILY RibA-like 312 484 IPR036144 -
Lele30g1237 716 Hamap 50S ribosomal protein L23 [rplW]. 636 716 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lele30g1237 716 Hamap GTP cyclohydrolase-2 [ribA]. 312 508 IPR000926 GO:0003935|GO:0009231
Lele30g1237 716 SUPERFAMILY YrdC/RibB 107 311 IPR017945 -
Lele30g1237 716 ProSitePatterns Ribosomal protein L23 signature. 694 709 IPR001014 GO:0019843
Lele30g1237 716 TIGRFAM ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 110 307 IPR000422 GO:0008686|GO:0009231
Lele30g1237 716 FunFam Riboflavin biosynthesis protein RibBA 314 485 - -
Lele30g1237 716 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 99 313 - -
Lele30g1237 716 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 107 504 IPR016299 GO:0009231
Lele30g1237 716 Gene3D GTP cyclohydrolase II 314 485 IPR036144 -
Lele30g1237 716 TIGRFAM ribA: GTP cyclohydrolase II 320 505 IPR000926 GO:0003935|GO:0009231
Lele30g1237 716 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 112 306 IPR000422 GO:0008686|GO:0009231
Lele30g1237 716 Pfam Ribosomal protein L23 636 697 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lele30g1237 716 Gene3D DHBP synthase 102 313 - -
Lele30g1237 716 PANTHER GTP CYCLOHYDROLASE II-RELATED 107 507 - -
Lele30g1237 716 Pfam GTP cyclohydrolase II 320 482 IPR032677 -
Lele30g1237 716 FunFam 60S ribosomal protein L23a 596 716 - -
Lele30g1237 716 Gene3D - 597 716 IPR012677 -
Lele30g1237 716 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 633 709 IPR012678 GO:0003735|GO:0005840|GO:0006412
Lele30g1237 716 Pfam Ribosomal protein L23, N-terminal domain 577 625 IPR005633 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1237 Lele-ChrLele30 15060635 15065411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1237 563 716 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 88.312 6.23e-65 210