Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1228 ATGTTCTTTAATGGGGGGAGAGGGAGCAAGAAAGATCTTTGCCCTCATGTTTGTGTTTTGCAATGCCATCCACAAGGTGCTCTGATCGGTCCTCCGTTCTTACTTGTGGTCAGCATTGCGAAAAGCTTCTTGAGTGTGGACGTCATAGGTGCGAAGGCGGAGGTTATTCTTTGTGGGGACATGGCCGTGAAGGGTGAAATTGAAGCTCAAGGTGGTGTATTTTCTTGTGGTTCCAATTGTGGGAAGAAGCTTAGCTGTGGTAATCATGTCTGCAATGAGATTTGTCATCCAGGCAACTGTGGGGAGTGTGAATTCTTACCAAGCCAGATTAAGACATGCTGTTGTGGGAAAACAAAATTGGAGGGGGAACGGCAGAGTTGTCTAGATCCAATACCAACCTGTTCACAAGTATGTGACAAGCCTCTTCCTTGTGGGTTGCATCATTGTAGGGAGGCATGTCATCCTGGGATTGTTCACCATGTTTGGTTCTAG 492 0.4675 MFFNGGRGSKKDLCPHVCVLQCHPQGALIGPPFLLVVSIAKSFLSVDVIGAKAEVILCGDMAVKGEIEAQGGVFSCGSNCGKKLSCGNHVCNEICHPGNCGECEFLPSQIKTCCCGKTKLEGERQSCLDPIPTCSQVCDKPLPCGLHHCREACHPGIVHHVWF 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1228 163 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 50 156 IPR034078 GO:0003700
Lele30g1228 163 CDD NF-X1-zinc-finger 76 121 - -
Lele30g1228 163 SMART znfxneu3 144 163 IPR000967 GO:0005634|GO:0008270
Lele30g1228 163 SMART znfxneu3 86 105 IPR000967 GO:0005634|GO:0008270
Lele30g1228 163 Pfam NF-X1 type zinc finger 144 156 IPR000967 GO:0005634|GO:0008270
Lele30g1228 163 Pfam NF-X1 type zinc finger 86 103 IPR000967 GO:0005634|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1228 Lele-ChrLele30 15001939 15002501 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Lele30g1228 None None None