Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1226 ATGTCTTCTCTAAATGGATCTGCTTCAAATCTTCCAGACAGTGCTGGTAGGTCATTTGCCACGTCATTCTCTGGCCAGTCTGGTGCTGCCTCCCCAGTTTTCCATCATAGTGGGGCTATCCAGGGATTGCACAACATCCACGGCAGCTTTAATGTTCCCAACATGCCGGGTACATTTACATCAAGAAATTCAACAATAAATAGCATCCCGTCTGGAGGGGTTCAACAGCCTACTGGGGGCCTTTCTAGTGGAAGATTTTCATCAAATAATCTTCCTGTTGCTTTGTCTCAGCTAACTCATGGAAGCTCTCATGGACATTCAAGAGTAACAAACAGAGGAGGTATAAGTGTTGTAGGAAATCCTGGATTCAGTAGTAGCACAAATGGAGTTGGAGGTTCTATTCCTGGGATTCTTCCAACATCTGCTGCAATTGGTAACAGAAATACTGTTCCAGGATTGGGAGTATCCCCAATTTTGGGAAATGCAGGTTCTCGAATTACAAGTTCTATGGGGAACATGGTTGGTGGAGGGAACATTGGGAGGAGCATTAGCTCTGCTGGAGGATTGTCTGTGCCTGGTCTTACTTCTCGTCTAAATTTAAGTGCAAACAGTGGATTTGGTGGTTTAAGTGTGCAAGGACAGAATCGGTTGCTGAGTGGCGTGCTACCACAAGGATCACCCCAAGTTATTTCAGTGCTAGGAAATTCTTATCCTAGTGCTGGAGGTCCCCTTGCCCAAAGCCATGTTCAAGCAGTAAATAATTTGAACTCCATGGGGATGTTGAGTGATATGAACTCGAATGACAGTTCCCCTTTTGACATCAATGACTTCCCTCAATTGACAAGTCGGCCCAACTCTGCTGGAGGGCCCCAAGGACAGTCGGGTTCTTTGCGAAAACAGGGTCTTGGGGTTAGTCCCATTGTCCAACAAAACCAAGAGTTTAGCATTCAAAATGAAGATTTTCCAGCTTTACCAGGATTTAAAGGTGGCAACACAGATTATGCTATGGATATGCACCAGAAAGAACAACTTCATGAGAATGCTGTGTCCATGATGCAATCTCAGCATTTTCCTATGGGAAGGTCTTCTGGTTTCAGCTTAGGGGGGGCATATTCGTCACATCGATCACAGCAACAGCACGCTCCATCTGTCAGTAGTGTTGGTGTCTCCTTTTCATCTGCAAACAATCAGGAACTTCTCCATCTACATGGGTCAGATATATTTCCAGCATCGCATTCAACCTATAATTCCCAGACTAGTGGAGCTTCTGGCATTGGATTAAGGCCTCCTAATTCTCCAAATACTGTTTCTGGTATGGGATCATATGACCAGCTTATTCAGCAATACCAACAGCACCAGAACCAGTCCCAGTCACAGTTTCGTTTTCAACAAATGTCAACTGCAAATCAGTCTTTTAGGGATCAAGGCATGAAATCCTTGCAAACTTCCCAATCGACACCAGATCCATTTGGTTTGCTTGGCTTGTTAAGTGTGATCAGGATGAGTGATCCTGATTTGACATCTCTTGCACTTGGAATCGATCTTACAACACTTGGGTTAAATTTAAATTCATCAGAAAATCTCCACAAGACTTTTGGATCTCCATGGTCCGATGAACCGGCTAAGGGTGATCCAGAGTTCACAGTGCCACAATGCTATTATGCTAAACAGCAACCTGCCCTGAATCATGGCTATTTTTCAAAGTTTACAGCGGAAACATTGTTCTACATATTTTACAGTATGCCCAAGGATGAAGCTCAAATATACGCTGCAAATGAGCTTTACAATAGAGGCTGGTTGTATCACAAAGAACATTTTTGGTTTATAAGAGTTCCTAACATGGAGCCGCTTGTCAAAACAAACACGTATGAGAGGGGATCTTACCACTGCTTTGATCCGAACACATTTGAAACAATTCGTAAGGATAATTTTGTCATTCATTATGAGTTGTTGGAAAAACCCACCTCTGCGTCATCATTTGAGGGGGAAGGGAAACGTGTGATGTAA 2007 0.4355 MSSLNGSASNLPDSAGRSFATSFSGQSGAASPVFHHSGAIQGLHNIHGSFNVPNMPGTFTSRNSTINSIPSGGVQQPTGGLSSGRFSSNNLPVALSQLTHGSSHGHSRVTNRGGISVVGNPGFSSSTNGVGGSIPGILPTSAAIGNRNTVPGLGVSPILGNAGSRITSSMGNMVGGGNIGRSISSAGGLSVPGLTSRLNLSANSGFGGLSVQGQNRLLSGVLPQGSPQVISVLGNSYPSAGGPLAQSHVQAVNNLNSMGMLSDMNSNDSSPFDINDFPQLTSRPNSAGGPQGQSGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNTDYAMDMHQKEQLHENAVSMMQSQHFPMGRSSGFSLGGAYSSHRSQQQHAPSVSSVGVSFSSANNQELLHLHGSDIFPASHSTYNSQTSGASGIGLRPPNSPNTVSGMGSYDQLIQQYQQHQNQSQSQFRFQQMSTANQSFRDQGMKSLQTSQSTPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWSDEPAKGDPEFTVPQCYYAKQQPALNHGYFSKFTAETLFYIFYSMPKDEAQIYAANELYNRGWLYHKEHFWFIRVPNMEPLVKTNTYERGSYHCFDPNTFETIRKDNFVIHYELLEKPTSASSFEGEGKRVM 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1226 668 MobiDBLite consensus disorder prediction 368 388 - -
Lele30g1226 668 FunFam probable NOT transcription complex subunit VIP2 isoform X1 480 660 - -
Lele30g1226 668 Pfam NOT2 / NOT3 / NOT5 family 530 651 IPR007282 GO:0006355
Lele30g1226 668 PANTHER CCR4 NOT-RELATED 40 653 IPR040168 GO:0030015
Lele30g1226 668 MobiDBLite consensus disorder prediction 411 432 - -
Lele30g1226 668 MobiDBLite consensus disorder prediction 260 300 - -
Lele30g1226 668 Gene3D - 480 664 IPR038635 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1226 Lele-ChrLele30 14990167 14993869 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1220 11 19309342 19310226 Lele30g1226 30 14990167 14993869 CCT
Lele12g0100 12 840542 841029 Lele30g1226 30 14990167 14993869 CCT
Lele09g1222 09 21113395 21116350 Lele30g1226 30 14990167 14993869 CCT
Lele10g1197 10 23131388 23134648 Lele30g1226 30 14990167 14993869 CCT
Lele30g1226 30 14990167 14993869 Lele31g1372 31 19554612 19558379 hybridization
Lele30g1226 30 14990167 14993869 Lele32g0170 32 983394 988508 hybridization