Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1209 ATGGTGGCTTCAGAAAGACTCGCTCATGATGTTTTTGCTGTTCTATATCTCAGCACTATTTCCAGTTTCATCTTCTCGATCTCTCAACTGGCAATCATGAGTGAGGAAGGAGAAAGGACTTGTCCTCTTTGTGCAGAAGAGATGGATTTGACTGATCAGCAATTGAAGCCATGCAAATGTGGTTATGAGATATGTGTTTGGTGCTGGCATCACATAATGGACATGGCTGAGAAGGATGACACAGAGGGGAGATGCCCTGCGTGTCGAACTCCATATGACAAGGAGAAGATTGTAGGGATGGCTGCAAACTGTGAGAGATTGGTGGCAGAAATTAATACTGAAAGGAAGATGAAGAGTCAGAAAGCAAAGTCCAAGTCTTCTGAAGGCCGGAAGCAGCTGAGCAGTGTGCGAGTTATTCAGCGTAATCTTGTCTATATAGTTGGATTGCCACTTAATCTGGCAGATGAAGAAATTCTTCAGCGGCGAGAGTATTTCAGTCAGTATGGGAAAGTCTTGAAAGTGTCAATGTCTCGGACAGCGGCTGGTGTCATTCAACAGTTTCCAAACAATACATGTAGTGTATATATTACTTACTCAAAGGAAGAAGAAGCAATTCGTTGTATTCAAAGTGTACATGGATTTGTCTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAGTATTGTCATGCATGGCTCCGAAACATGCCTTGCAGCAATCCTGATTGTTTATATCTGCATGAGATTGGCTCTCAAGAAGATAGTTTCACAAAAGATGAAATAATTTCAGCATACACTAGAGTTCAACAAATTACGGGTGCCACAAATAATATGCAACGGCAGTCAGGGGATGTGTTGCCACCCCCAATTGATGATTACATGAACCATTCTGCTGGAAAACCCATTGTGAAAAATGCCTCAAATAATTTTACTAGCACTGCTAGAGGTTCACCTCCAAATGGAAGTTCTGGAAGATCTATAGCTCTAAATCCTGCTGCTGCGTGGGGTACAAGAGCTACAAATTGTCAGCCCCCTACTGGAGGTTTATTATGTCCAAATGGACCACCTAAGCCAAAAGCTGATGCTGTCAGTGGAACACTAGCCTTTTCAGCTGTTGCAGGTTCAAGCCAGAACTCTTTATTGCACAGTGATGCAACCAAGAGACCACTGTCAAGTGACGGGAGTCATAATGACCTTAGAGTACAAAATGATTCATTAAAACCTGTAAAGCAATTGGATAGCATGGACAATCCAAGTAATGCGGGTGAAAAGACTGCTACATCTGCTGATGCTTCCCTTGCACCTGTTAATTCAAACAGCTTGTCTTCTTTACCGTTATCCAGAGATGGTGATAGAGGCACTTGTACTACATCAAACACAACAAATTCTACTGACATCACTGGGCAGTCAGGCAGCTCTGGTCCTGAGGAAGCAACTATTGCTACCAATGAAGAGATTCAGAACTTGTGCTCCAATCTGTCCTCTGTTAACATTGATAGAAATGGCCAAAGTGAATACTATGGTATGGTCAGATCTAATAGCCCCCCTTCTGATTATGTGTTGACAAAGTCTCCTCAACTTCAAGCATCCCAGCAGCATAAAGATGACAAATTTAGAGATGTGCAATTTTCAGGCGAATCTGGTAAAACTGCTCCATCTGATTGGGAGCAGTCTGATTGGAAATTGAATTCACGATCCCAAATAGTATCAGCTACAACTGACTTGGAAGATGATATAGCTTCTTTTGATAATCAAAGGCTCAACGATCCAGAAGTTGTTAGTCATTCTCCTTACATGCCTACGTCAACAAGTTTTGTTCATGTCCCAATCCATTCTAATCATAATCTCATCCAACATGGGGAACAGCCCCATGCTGTTAATGTTGATTTTGTATCTGCTGATTCTAAGGTTGGGGATGATTCTCTATTATATCCATCCAGCATATTATGTAATGGTTACCCTGATAAATTGGTCGGCAGCTGCTCTTCTGGTTTGAATAGCACCCCTGATTGTACCTCACTTCAGGATGTAAGAAATGAACAATGCATTGGAAGATTATTCGCTGAAGCAGTTAGTGCTGGAAATGATACTGCATTGGATAAGGGTGAGAGTAGTATAATTTCAAATATATTGTCCATGGACTTTGATGCCTGGGATGACTCGCTGACATCACCGCAGAATTTGGTTAAGTTGCTTGGTGACAACACTGATAACCGGTTTGTTCCCTTAAAAAAATCAAGTTCTTTGAAAATGCAGAATAATAGTCAATCAAGATTCTCTTTTGCAAGACAGGATGAACCTAGAATGCAAGCATTTAATGCAAACCCATCTTATGGTATTAGTGAGCAATTTCAAGGGAGGGGCTCTTTCATACGGGATTTTTCTGAAAGAGACTTGTATAATGATAGGAAGTTGGGTATGGCAAATGGCCTTTCTTCCTGTAAACTTGAGGAATCTGAAAATCTAGGCAGTGGTCACTTTGTTCCTTCTAGTAAGCATTCCGCTGTTTCTAGAGCTCAAATTTCTGCTCCTCCAGGATTTTCAGTTCCAAGTAGGCCTCCACCACCAGGTTTTTCTTCTTACGAGAGAGTGGAACCGGCTTTCAGCTCAGTATCTGGTTATCAGACACCCACAGCTGGAAATATTGGTTGTACAGGGGACATCGAATTAGTAGATCCTGCCATTTTGGCTGTTGGCACTGGCAGACTTCAAGGTTCACTAAACAGCCCAGGGTTGGAAATCAGATCTAGTTTCTCCCCACAATTAAATTACTTTGAAAACGAGGCCAGACGTCAATTATTGATGCAAAGATCTCTCTCACAACCACAGAACAGATTTGCTGAAATTGGGAGTACTTTTTCTCAGATTGGTGATTCTTATGGCATTTCTTCAAGGTTAGACCAATCACAAGTCGGCAATTTGACCCCTTTTGCTCAGTTGTCCTTACAGCAGTCTAGAAATGCTCTTTTGTCTAATGGCCAATGGGATGGGTGGAATGAGGTGCAGAGTGGAAGTAGTCTAGGGGTGGCTGAGCTACTAAGAAATGAAAGACTTGGGATTAACAAGTTATATGCAGGATATGATGATTCAAAATATCGGATGCCAAATTCTGGGGATCTTTACAACCGAACTTATGGGATCTGCAACTGGTTTGGATTTACAGAAGTGAGCTGTAGTGGGATACAAATTGCCAATACCATTGTGATCGGACTGCCAGGTAGAACTTAG 3234 0.419 MVASERLAHDVFAVLYLSTISSFIFSISQLAIMSEEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRTPYDKEKIVGMAANCERLVAEINTERKMKSQKAKSKSSEGRKQLSSVRVIQRNLVYIVGLPLNLADEEILQRREYFSQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAIRCIQSVHGFVLEGRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRVQQITGATNNMQRQSGDVLPPPIDDYMNHSAGKPIVKNASNNFTSTARGSPPNGSSGRSIALNPAAAWGTRATNCQPPTGGLLCPNGPPKPKADAVSGTLAFSAVAGSSQNSLLHSDATKRPLSSDGSHNDLRVQNDSLKPVKQLDSMDNPSNAGEKTATSADASLAPVNSNSLSSLPLSRDGDRGTCTTSNTTNSTDITGQSGSSGPEEATIATNEEIQNLCSNLSSVNIDRNGQSEYYGMVRSNSPPSDYVLTKSPQLQASQQHKDDKFRDVQFSGESGKTAPSDWEQSDWKLNSRSQIVSATTDLEDDIASFDNQRLNDPEVVSHSPYMPTSTSFVHVPIHSNHNLIQHGEQPHAVNVDFVSADSKVGDDSLLYPSSILCNGYPDKLVGSCSSGLNSTPDCTSLQDVRNEQCIGRLFAEAVSAGNDTALDKGESSIISNILSMDFDAWDDSLTSPQNLVKLLGDNTDNRFVPLKKSSSLKMQNNSQSRFSFARQDEPRMQAFNANPSYGISEQFQGRGSFIRDFSERDLYNDRKLGMANGLSSCKLEESENLGSGHFVPSSKHSAVSRAQISAPPGFSVPSRPPPPGFSSYERVEPAFSSVSGYQTPTAGNIGCTGDIELVDPAILAVGTGRLQGSLNSPGLEIRSSFSPQLNYFENEARRQLLMQRSLSQPQNRFAEIGSTFSQIGDSYGISSRLDQSQVGNLTPFAQLSLQQSRNALLSNGQWDGWNEVQSGSSLGVAELLRNERLGINKLYAGYDDSKYRMPNSGDLYNRTYGICNWFGFTEVSCSGIQIANTIVIGLPGRT 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1209 1077 CDD RRM_CNOT4 137 236 IPR034261 -
Lele30g1209 1077 MobiDBLite consensus disorder prediction 306 330 - -
Lele30g1209 1077 MobiDBLite consensus disorder prediction 397 479 - -
Lele30g1209 1077 SUPERFAMILY RING/U-box 33 98 - -
Lele30g1209 1077 Gene3D - 143 224 IPR012677 -
Lele30g1209 1077 CDD mRING-HC-C4C4_CNOT4 41 90 IPR039515 -
Lele30g1209 1077 MobiDBLite consensus disorder prediction 379 479 - -
Lele30g1209 1077 SUPERFAMILY RNA-binding domain, RBD 136 222 IPR035979 GO:0003676
Lele30g1209 1077 SMART rrm1_1 143 224 IPR000504 GO:0003723
Lele30g1209 1077 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 143 224 - -
Lele30g1209 1077 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 144 222 IPR000504 GO:0003723
Lele30g1209 1077 MobiDBLite consensus disorder prediction 306 329 - -
Lele30g1209 1077 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 33 1043 IPR039780 GO:0004842|GO:0030014
Lele30g1209 1077 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 228 IPR000504 GO:0003723
Lele30g1209 1077 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 109 IPR013083 -
Lele30g1209 1077 ProSiteProfiles Zinc finger RING-type profile. 41 89 IPR001841 -
Lele30g1209 1077 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 33 109 - -
Lele30g1209 1077 Pfam RING/Ubox like zinc-binding domain 41 93 - -
Lele30g1209 1077 MobiDBLite consensus disorder prediction 508 531 - -
Lele30g1209 1077 SMART rrm2_1 143 224 IPR003954 GO:0003676
Lele30g1209 1077 MobiDBLite consensus disorder prediction 508 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1209 Lele-ChrLele30 14837965 14849850 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1206 09 21005612 21020279 Lele30g1209 30 14837965 14849850 CCT
Lele30g1209 30 14837965 14849850 Lele31g1356 31 19435391 19441336 hybridization
Lele30g1209 30 14837965 14849850 Lele32g0186 32 1115839 1122093 hybridization