Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1206 ATGGATTACATCGACAACTTGCCGCCGATGGATCTCATGCGCTCCGAGAAAATGATCTTCGTTCAACTTATCATGCCCGTCGAGTCCGCTCATCGAGCTATCTCTTATTTGGGCAAACTTGGCCTCCTCCAATTCCGAGATTTGAACGATGATAAAAGCCCCTTTCAGAGAACCTTTGCTAATCAGGTAAAGCGGTGTGCAGAAATGTTGAGAAAGCTACGATTCTTCAAGGATCAAATCAATAAAGCTGGTTTGATGTGTTCTCCTAGCCTTGCCTTGCAACCTGATATTGAGTTAGAGGAACTAGAGATACAGCTTGCTGAACATGAACATGAGCTAAATGAAATGAACTCTAATAGTGAGAAACTTCAGCAGTCATATAATGAGCTCCTGGAGTTCAAGATTGTATTGCAAAAGGCATGTGGTTTTCTTGCATCAAGTCATAGCCATGCTGCTATAGAGGAGAGAGAACTGGAGGAGCATGTATATTCTAATAATGATGATTATGTTGAGAGTGCATCTTTGCTTGAACAGGAAACAAGGCCTGGATCGTCAAATCAATCTGGTTTAAGATTTATCAGTGGGATAGTTTGTAAATCTAAAGTTCTTAGGTTTGAAAGGATGCTGTTTCGTGCTACAAGAGGCAATATGCTTTTCAACCAGGCACCAGCTGATGAACAAATCATGGATCCTATTTCAACAGAGATGGTTGAGAAAACAGTGTTTGTTGTATTTTTCTCTGGGGAGCAGGCAAGAACAAAGATTCTGAAAATTTGTGAGGCATTTGGTGCAAATTGTTACCCTGTGCCTGAAGATATACATAAACATAGGCAAATAACTAGGGAGGTTTCATCACGTCTTGTTGACTTAGAAGCAACTTTGGATGCTGGTATTAGGCACAGGAATAAGGCCCTTGCTTCCATAGGGGGTCATTTAGCAAAATGGATAAATATGGTAAGAAGAGAGAAGGCCGTGTATGATATACTCAACATGCTTAATTTTGACGTCACAAAAAAATGCCTTGTTGGAGAGGGATGGTGCCCCATATTTGCAAAAACACAGATCCAGGAGGCATTGCTTCGTGCAACTTTTGATAGTAATTCTCAAGTTGGCATAATCTTTCATGCGATGGATGCAGTGGAATCACCACCTACTTATTTTAAAAACAACCGCTTCACCAGTGCTTTCCAGGAAATTGTTGATGCATATGGTGTTGCAAGATACCAAGAAGCAAATCCTTCAGTTTACACAGTAATTACATTCCCGTTTCTTTTTGCTGTGATGTTTGGGGACTGGGGTCATGGAATCTGCCTGTTGCTAGGAGCATTATTTCTAATAGCACGTGAAAGCAAGTTCAGCACACAGAAACTTGAAAGCTTTATGGAGATGCTATTTGGAGGGCGCTATGTGCTTCTTTTGATGGCACTGTTTTCAATCTATTGTGGGCTAGTCTACAATGAATTCTTCTCTGTTCCTTTTCACATTTTTGGTAGATCTGCTTATGATTGCCGAGATACTTCATGCAGGGATGCACATACTGCTGGCTTAGTCAAAAACCATGATACATACCCATTTGGTGTGGATCCCAGCTGGCGAGGAAGTCGATCAGAATTGGCTTTTCTGAATTCACTCAAGATGAAGATGTCCATTCTTTTGGGAGTGGTACAGATGAACTTAGGAATTCTATTAAGTTACTTCAATGCTCGTTTCTTTGGTAACTCCGTGGATATAAGGTACCAGTTTGTGCCACAGATGATTTTCCTCAACAGTCTATTTGGGTATCTTTCCCTTCTCATTATTGTTAAGTGGTGCACTGGGTCTCAGGCAGATCTCTATCATGTAATGATTTACATGTTTTTAAGTCCCACTGACAATCTTGGTGAGAATCAGTTGTTCTGGGGCCAAAGGTTTCTTCAGATTGTGTTATTGCTGTTGGCTGTGGTTGCTGTTCCATGGATGCTCTTTCCAAAACCTTTTATATTAAAGAAGCTTCAAACAGAGAGATATCAAGGACAAGCTTACGATAGGCTTAACACATCGGAGATGGATCTTGAGGTGGAACCAGATTCTGCTAGGGCTAAGCAACACCATGAGGAATTCAATTTTAGTGAGGTCTTTGTTCACCAAATGATCCACTCCATCGAGTTTGTCCTTGGTGCAGTTTCAAATACGGCATCATATCTTAGACTTTGGGCATTAAGCTTGGCTCACTCAGAACTTTCTACTGTTTTCTATGAAAAAGTCCTCCTCCTTGCTTGGGGGTATGACAATCTGAAAGATGCGGCACTACTCAAATTTGTAGAAGGAGAATTCATGGGTAGTAATATCGTCACTGGGCTCGCTTGTTGCTATATGCCAATGCTGCTTGATACTGACCTATCGACCAAACTTCTGGCTCGTGTTCCCGTGGCTTATGCTTGTTTTGTTTACATTTCACTCTTTGCTCTGCATGATACTGAAGTTTTCATATCCACATTTCAATCGCTTCCTGTATACGATGGAAATATGAATCGTGTGGCTGATTTTTGGTTTGGTTTTCTGCAGAATCTTAGCCATGGGCAAGTCTTCGGGACCATTAAGCTTGAAGAGGAATGTAAACAGAGTGCTAACAATGGACTTGACATAGCTATATATTAA 2637 0.4103 MDYIDNLPPMDLMRSEKMIFVQLIMPVESAHRAISYLGKLGLLQFRDLNDDKSPFQRTFANQVKRCAEMLRKLRFFKDQINKAGLMCSPSLALQPDIELEELEIQLAEHEHELNEMNSNSEKLQQSYNELLEFKIVLQKACGFLASSHSHAAIEERELEEHVYSNNDDYVESASLLEQETRPGSSNQSGLRFISGIVCKSKVLRFERMLFRATRGNMLFNQAPADEQIMDPISTEMVEKTVFVVFFSGEQARTKILKICEAFGANCYPVPEDIHKHRQITREVSSRLVDLEATLDAGIRHRNKALASIGGHLAKWINMVRREKAVYDILNMLNFDVTKKCLVGEGWCPIFAKTQIQEALLRATFDSNSQVGIIFHAMDAVESPPTYFKNNRFTSAFQEIVDAYGVARYQEANPSVYTVITFPFLFAVMFGDWGHGICLLLGALFLIARESKFSTQKLESFMEMLFGGRYVLLLMALFSIYCGLVYNEFFSVPFHIFGRSAYDCRDTSCRDAHTAGLVKNHDTYPFGVDPSWRGSRSELAFLNSLKMKMSILLGVVQMNLGILLSYFNARFFGNSVDIRYQFVPQMIFLNSLFGYLSLLIIVKWCTGSQADLYHVMIYMFLSPTDNLGENQLFWGQRFLQIVLLLLAVVAVPWMLFPKPFILKKLQTERYQGQAYDRLNTSEMDLEVEPDSARAKQHHEEFNFSEVFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLKDAALLKFVEGEFMGSNIVTGLACCYMPMLLDTDLSTKLLARVPVAYACFVYISLFALHDTEVFISTFQSLPVYDGNMNRVADFWFGFLQNLSHGQVFGTIKLEEECKQSANNGLDIAIY 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1206 878 PANTHER VACUOLAR PROTON ATPASES 12 759 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lele30g1206 878 Pfam V-type ATPase 116kDa subunit family 36 753 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lele30g1206 878 Coils Coil 99 126 - -
Lele30g1206 878 PIRSF ATP6V0A1 8 779 IPR026028 GO:0000220|GO:0046961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1206 Lele-ChrLele30 14819218 14828754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1206 2 758 Primary Pumps ATPases(2) AT2G28520 79.551 0.0 1238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1206 30 14819218 14828754 Lele09g1198 09 20931760 20942696 CCT
Lele30g1206 30 14819218 14828754 Lele10g1175 10 22939396 22948718 CCT
Lele30g1206 30 14819218 14828754 Lele11g1199 11 19132395 19141930 CCT
Lele30g1206 30 14819218 14828754 Lele12g0121 12 974398 983394 CCT
Lele30g1206 30 14819218 14828754 Lele31g1352 31 19413064 19420944 hybridization
Lele30g1206 30 14819218 14828754 Lele32g0189 32 1135035 1144714 hybridization