Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1203 ATGTTCTCCCATCTGGGTAATGAATGGAAGAAGCCATTTGCTGGATCCTCTCATGCTAAAGGCATTGTTCTCGAAAAAATTGGAATTGAGGCTAAGCAGCCAAACTCTGCCATTAGAAAGTGTGCTAGAGTGCCGTTGATCAAGAATGGGAAGAATATTGCAGCCTTTGTGCCCAATGATGGTTGCATGAACTACATTGAAGAAAATGACGAGGTGCTGATTGCTGGATTTGGTCGAAAAGGGCATGCTGTCGGAGATATTCCCGGAGTCCGATTCAAGGTTGTGAAGGTATCAGGAGTGGCCCTTTTGGCTCTCTTCAAAGAGAAGAAGGAGAAGAACAGCTGTCATCGGAGGAAGAAGGACTTTGAGATTCTGCCTGATCGTAGCAAGACGCAATCATGGCAGAAGATCTCGAAAACCGGGCTCTATTCAAAACTCAAAGGAGCTAAAACTATGGATTCCAACTTACCAGAGAGTTCAGACTCAGACTGCAATCAACCATGA 504 0.4504 MFSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVPLIKNGKNIAAFVPNDGCMNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVALLALFKEKKEKNSCHRRKKDFEILPDRSKTQSWQKISKTGLYSKLKGAKTMDSNLPESSDSDCNQP 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1203 167 ProSitePatterns Ribosomal protein S12 signature. 32 39 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lele30g1203 167 FunFam 40S ribosomal protein S23 2 115 - -
Lele30g1203 167 Pfam Ribosomal protein S12/S23 7 113 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lele30g1203 167 TIGRFAM uS12_E_A: ribosomal protein uS12 10 113 IPR005680 GO:0003735|GO:0006412|GO:0015935
Lele30g1203 167 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 3 113 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lele30g1203 167 SUPERFAMILY Nucleic acid-binding proteins 10 119 IPR012340 -
Lele30g1203 167 CDD Ribosomal_S23 3 112 IPR005680 GO:0003735|GO:0006412|GO:0015935
Lele30g1203 167 Gene3D - 2 115 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1203 Lele-ChrLele30 14798663 14801327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1203 3 112 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 96.364 5.10e-74 216