Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1189 ATGGCCACCAACCGTTTTGTGTGCGAAATCTGCAAGAAGGGGTTCCAGAGAGACCAGAATCTGCAGCTGCACCGCCGCTGCCACAACCTCCCCTGGAAGCTCCGGCAGAGAAGTGACAAAGAAGCGGCCTGCAAGAAAGTGTACGTGTGCCCTGAAAAGACGTGCGTCCACCACGATCCTTCCAGAGCCCTGGGAGACCTCACCGGCATCAAGAAGCACTACAGCAGAAAACATGGCGAGAAGAAGTGGAACTGCCACAAGTGCTCCAAGAAATACGCCGTTCGCTCCGACTGGAAGGCGCATATCAAGATTTGCGGCACTAAAGAGTACAAATGTCACTGTGGCACTCTTTTCTCCAGGAAAGACAGCTTCTTGACGCATAGAGCTTTCTGTGATGTCTTGGCGGAAGAAAGTACCCGAATAAGCTTCGTTCCAGAAGCACCTAGAATCCCTCAGATTTTTACTGGCTATTATCCAGGCTATGGAGGTTCATCAGAAACACTGATCCAGGTCAATTCTAGCGTGCCTGATTTGATGCAAACCATGAACATACTCGCGACTTCTTCTTCGTCGTCCTCGTGGGTGAAACCATACCCAGAAGCATCATTCGAAAGTTTAGCCAATCTGGCCATGTCTGGGGTACCTCGGCTACTGAAGGAGGAGGAGGAAGAAGAGAACAAAGGAGGGTTGTCATATAGCGCGAGCTGTTTGTATGGTAGTAATTATCAAAAGCCATCGCAAGTAGGCTTGTCTCAGACTCATCACATGCCATCACCCACTTCACTGTTACAAAAAGTAACCCAGATGGGATCTACAGGAACCAACCATATCGACATTTTTGGGTTCATGGGTGGATCCTTACCACTCTCCAACAGCACGACGACGCCGTTTATTAGAAATGGCGATCAAAACTTGAGCGACTTGGTGATCTCACAGGGAAACACCAATAATGTTGGAGTTGGAGGGGATGATGATGGTCATGGATTGGCATTGAATGGTTGGGACTCGAGCCACTTTGTGAGAAGCGGCGAGAATTTAGAACAAATGGAATTGGGTGAATTAACCAGAGATTTTCTAGGAGTTGGTGAAAAAGAGTTAGCCAAGTTTGATGCAATTGGCTCGGCTGCTCAGCCATGGAGCTGA 1143 0.4864 MATNRFVCEICKKGFQRDQNLQLHRRCHNLPWKLRQRSDKEAACKKVYVCPEKTCVHHDPSRALGDLTGIKKHYSRKHGEKKWNCHKCSKKYAVRSDWKAHIKICGTKEYKCHCGTLFSRKDSFLTHRAFCDVLAEESTRISFVPEAPRIPQIFTGYYPGYGGSSETLIQVNSSVPDLMQTMNILATSSSSSSWVKPYPEASFESLANLAMSGVPRLLKEEEEEENKGGLSYSASCLYGSNYQKPSQVGLSQTHHMPSPTSLLQKVTQMGSTGTNHIDIFGFMGGSLPLSNSTTTPFIRNGDQNLSDLVISQGNTNNVGVGGDDDGHGLALNGWDSSHFVRSGENLEQMELGELTRDFLGVGEKELAKFDAIGSAAQPWS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1189 380 FunFam protein indeterminate-domain 5, chloroplastic-like 61 140 - -
Lele30g1189 380 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 364 IPR031140 -
Lele30g1189 380 Gene3D Classic Zinc Finger 40 131 - -
Lele30g1189 380 SMART c2h2final6 83 103 IPR013087 -
Lele30g1189 380 SMART c2h2final6 48 78 IPR013087 -
Lele30g1189 380 SMART c2h2final6 6 28 IPR013087 -
Lele30g1189 380 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Lele30g1189 380 SUPERFAMILY beta-beta-alpha zinc fingers 5 103 IPR036236 -
Lele30g1189 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1189 Lele-ChrLele30 14713331 14714568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1189 1 148 IDZ Gene Family AT3G45260 81.081 4.54e-89 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele30g1189 None None None