Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1185 ATGGCTTCTTCCAAAAATTCGAAGACGGAACACGAGAGCGAAGCGGCAGACAGCTCCAAAACAGCAAAGAAAGCTGCTAAGCCCAGAAAAGAGAAGCACCTGGACAAGAAAAACAAGAGTACTAAGAAGAAGAAGACACTTAACAATTCTGATGTGAATAAGGAAGATACAGAGATCGTTGTTCCATCTTCCAGCACCGAGTCCCATGAACAAGCCCAAGAGGAAGGGCGTGGGGAAGACAAGACCGAGATCACGAATGGGAGAACCAGTGCAACGAATCCCAAAAAAGACAAAGTCAAAGGAAAGAAATACGATGACGTAGATGAAGCTGAAGGGAAAGGAGACGCCAAAGGCAATGTATTTCCCATGAATCGTATCAGGACGATAATTAGGGGCCAAGATCTTGACTTGCGTGTTTCCCAGGAAGCCATATTTGCCATCAACAAAGCCACGGAGATGTTCCTTGAACAATATACGCGGGGCGCTCATGCTTCATGTGTTCGGGATCGAAAAAAATCCCTTGCTTACAAACACCTATCATCTGTTGTTAGTAAGCAGAGCAGATACGACTTTCTATCAGATTTTGTTCCGGAGAAAATAAAAGCGGAGGATGCATTAAGGGAGAGAAATTCAAATTCCGGTGTGAATGGTGGCAAGTCTTGGACTGAAACTGCAATAGAAACTGTGAAAAAGGTCAAGTCCAAGAAGAGAGCGAGTCAATTTCAGTTCACTCCATTGTTGAAGACGACGACCACCATGACGAAACACCTCTCACTTCTTCTCCTTGCTCTGTTTCTTTCCACTACTTCAGCTCAGTCGCCTGCGGCGGCTCCGGCTCCTACTCCGTCCTCGCCTCAGACAGACATCATCAGAATCCTCAACAAGGCAGGAGGATTCACCACTCTGATACGTCTTCTCAAGACAACCCAAGTAGCTAACCAAATCAACTCTCAGCTTTTGACTTCAAGTGGTGGCATCACATTCTTCGCCCCCACCGACAATGCCTTCTCCAGTCTCAAACCTGGGTTCCTCAATTCCCTCAACGACCAGCAGAAGAACGAGCTCGTTCAATTCCACATATTACCCACATTGGTCTCCCTCTCAAATTTCGACACTTTGAGCAACCCCGTGAGAACTCAAGCAGGGGCGGATCCGGATCGGTTGGCCCTCAACGTCACGGGTTCCGGCAACCAAGTCAACATGACGACCGGCGTTGTAAATGCCACCGTCGGTGGGACCGTGTATACAGATAGCCAGCTAGCGGTGTACCAAGTGGACAAGGTGCTTCTCCCCCGGGATTTCTTTGAGGCCAAGGCTCCGGCGCCGGCGCCGGGGCCTGCATCGGCCAAGACGAAAGCATCAAAGAAGAAAGCAGCTGAGGGACCTGCATCTCCTGCGGATGACTCTGCAGCGATAAGCTTGAAACAGAGGAAAGAGATGTGGGGGGCCATTGTTGGAGCTGCAGTGATGGGATTTTGGTTATGA 1485 0.4909 MASSKNSKTEHESEAADSSKTAKKAAKPRKEKHLDKKNKSTKKKKTLNNSDVNKEDTEIVVPSSSTESHEQAQEEGRGEDKTEITNGRTSATNPKKDKVKGKKYDDVDEAEGKGDAKGNVFPMNRIRTIIRGQDLDLRVSQEAIFAINKATEMFLEQYTRGAHASCVRDRKKSLAYKHLSSVVSKQSRYDFLSDFVPEKIKAEDALRERNSNSGVNGGKSWTETAIETVKKVKSKKRASQFQFTPLLKTTTTMTKHLSLLLLALFLSTTSAQSPAAAPAPTPSSPQTDIIRILNKAGGFTTLIRLLKTTQVANQINSQLLTSSGGITFFAPTDNAFSSLKPGFLNSLNDQQKNELVQFHILPTLVSLSNFDTLSNPVRTQAGADPDRLALNVTGSGNQVNMTTGVVNATVGGTVYTDSQLAVYQVDKVLLPRDFFEAKAPAPAPGPASAKTKASKKKAAEGPASPADDSAAISLKQRKEMWGAIVGAAVMGFWL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1185 494 SMART fasc_3 327 432 IPR000782 -
Lele30g1185 494 Gene3D Histone, subunit A 81 198 IPR009072 GO:0046982
Lele30g1185 494 MobiDBLite consensus disorder prediction 1 114 - -
Lele30g1185 494 MobiDBLite consensus disorder prediction 93 114 - -
Lele30g1185 494 MobiDBLite consensus disorder prediction 440 469 - -
Lele30g1185 494 FunFam Fasciclin-like arabinogalactan protein 11 269 431 - -
Lele30g1185 494 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 121 183 IPR003958 -
Lele30g1185 494 MobiDBLite consensus disorder prediction 25 43 - -
Lele30g1185 494 Gene3D FAS1 domain 265 432 IPR036378 -
Lele30g1185 494 MobiDBLite consensus disorder prediction 70 84 - -
Lele30g1185 494 MobiDBLite consensus disorder prediction 53 69 - -
Lele30g1185 494 MobiDBLite consensus disorder prediction 7 24 - -
Lele30g1185 494 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 256 475 IPR045003 -
Lele30g1185 494 ProSiteProfiles FAS1/BIgH3 domain profile. 286 429 IPR000782 -
Lele30g1185 494 Pfam Fasciclin domain 298 431 IPR000782 -
Lele30g1185 494 SUPERFAMILY FAS1 domain 275 432 IPR036378 -
Lele30g1185 494 SUPERFAMILY Histone-fold 97 192 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1185 Lele-ChrLele30 14692504 14696504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1185 121 182 CCAAT-HAP5 Transcription Factor Family AT1G07980 48.387 1.05e-15 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lele30g1185 Fasciclin 2.7e-21 No_clan