LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele30g1181	ATGATTTGTAGGAAGTTTCCTGTTAAGGAAACTCACAAAGTTGTTCGTGGAGAGGATGAAAATGGTAACAAGATGGTAAATGAATATGTTCGGGAGCACAAGATTGGTTCTGGTAGTTATGGGAAAGTGGTTTTATACCGAAATTGTGCAGATGGAAAGCATTATGCAATCAAGGCCTTTCATAAGTCTCATTTACAGAAGCTTCGAGTTGCACCCTCAGAGACTGCCATGACTGATGTTCTACGGGAGGTACTCATCATGAAAATGCTGGAACATCCTAACATAGTCAATCTCATTGAGGTGATTGATGACCCAGAATCAGATCACTTCTACATGGTACTTGAATATGTAGAAGGCAAATGGGTTTGTGAGGGGTCAGGTCCTTCCTGTAGCTTGGGTGAGGAGACTACTAGGAAATACTTGCGTGATATAGTTTCAGGATTAAGATACCTTCATGCTCATAATATAGTGCACGGGGATATTAAACCTGATAATCTGTTGGTTACTCGTCATGGTACAGTAAAGATTGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGATGATAATGATGAACTTCGCCGATCACCTGGGACTCCTGTTTTCACTGCTCCAGAATGTTGTTTAGGTCTTACCTATAACGGCAAAGCTGCAGATACATGGGCAGTTGGAGTTACTTTGTACTGCATGATCTTGGGCGAATACCCATTTCTTGGAGACACACTTCAAGATACTTATGATAAAATAGTCAATAATCCTTTAGTGCTCCCAGATGATTTGAATCCCCAAATAAGAAACTTACTGGAAGGATTACTTTGCAAAGATCCAAAGCATCGGATGATACTGGGCGATGTTGCGCAGCATAGCTGGGTTATTGGAGATGATGGGCCAATTCCTGAATATTTGTGTTGGTGCAAACGCAAGAGACTAAGAGGGGAAGATTTGAATAGCAACAACATGCTTGCTTGA	966	0.4161	MICRKFPVKETHKVVRGEDENGNKMVNEYVREHKIGSGSYGKVVLYRNCADGKHYAIKAFHKSHLQKLRVAPSETAMTDVLREVLIMKMLEHPNIVNLIEVIDDPESDHFYMVLEYVEGKWVCEGSGPSCSLGEETTRKYLRDIVSGLRYLHAHNIVHGDIKPDNLLVTRHGTVKIGDFSVSQAFEDDNDELRRSPGTPVFTAPECCLGLTYNGKAADTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNNPLVLPDDLNPQIRNLLEGLLCKDPKHRMILGDVAQHSWVIGDDGPIPEYLCWCKRKRLRGEDLNSNNMLA	321

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele30g1181	321	ProSiteProfiles	Protein kinase domain profile.	29	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele30g1181	321	FunFam	Serine/threonine-protein kinase Ssp1	23	125	-	-
	Lele30g1181	321	ProSitePatterns	Protein kinases ATP-binding region signature.	35	58	IPR017441	GO:0005524
	Lele30g1181	321	Gene3D	Transferase(Phosphotransferase) domain 1	127	296	-	-
	Lele30g1181	321	Gene3D	Phosphorylase Kinase; domain 1	23	125	-	-
	Lele30g1181	321	PANTHER	MAP/MICROTUBULE AFFINITY-REGULATING KINASE	21	292	-	-
	Lele30g1181	321	SUPERFAMILY	Protein kinase-like (PK-like)	25	302	IPR011009	-
	Lele30g1181	321	FunFam	Serine/threonine-protein kinase GRIK2	19	319	-	-
	Lele30g1181	321	Pfam	Protein kinase domain	29	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele30g1181	321	SMART	serkin_6	29	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele30g1181	321	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	156	168	IPR008271	GO:0004672\|GO:0006468
	Lele30g1181	321	CDD	STKc_LKB1_CaMKK	35	290	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele30g1181	Lele-ChrLele30	14667307	14670390	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele30g1181	24	297	CBL-interacting serine-threonine protein kinases	AT5G35410	32.847	4.36e-44	153

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-LKB	Lele30g1181		Pkinase	1.8e-58	CL0016