Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1180 ATGAACTTAACTATTGAGGATCCTGTTATTAAAAGGGGAAAACAAGAAATACACTCAAACATGGGGCCACCCCCCGCTTCACCCTTCATTGCAATCGCCGGTCACCTGCATCATGCTCTGACGCCACCGTTATTCTCGTCCAATCATGCGGCGGTTCTGTGTCTGAGATCCGAACGTTTTTCTTCCTTCCCGTTTATTCTGTCTCGACCCCTGGAATTTGGTCGAGGGAAATTTCCGGGAGCTCTCGTTAATTGGCTGGAAGATGAAGAGAAGGTGAAAAAGTTTTTGAAAATGAATTCAAGGGAAGGAGTGAATGATGGTCGAACTAGAATTGAACCAAATGATTCTCTTCTCCCTGGTCTTATTGATGATGTTGCCCTGAATTGTTTTGCGTGGGTTAGTAGATCGGATTATGCTTCAATATCTTGTATAAATAAAAGATACAATAAGCTGATTAAAAGTGGGTATTTATATGGGTTGAGGAAACAGTTGGGACTTGTGGAGCATTGGGTTTATTTGGTGTGTGATCCAAGGGGATGGGAGGCATTTGACACCATGAAAAAGAAATGGATGGCATTACCTAAGATACCGTGTGATGAGTGCTTCAACCATGCAGACAAGGAGTCCTTGGCTGTGGGCAGTGAGCTATTGGTATTTGGTCGGGAATTGCTGGATTTTGCTATTTGGAAGTATAGCTTGATTTTTCACCGTTGGGTTAAGTGTCAGGGGATGAATCGGCCGCGCTGTTTGTTTGGATCTGGTAGTCTTGGTTCAATTGCCATTGTTGCAGGTGGAAGTGATAAAAATGGAAATGTTCTAAAATCAGCTGAGTTGTATGACTCTTCGTCTGGTAGATGGGAACAGTTACCAAACATGCACACACCACGTAGATTGTGCTCTGGTTTTTTCATGGATGGAAAATTCTATGTGATTGGTGGAATGTCAAGTCCTGCAGTTTCATTGACCTGTGGAGAGGAGTATAATCTTGAGACGAGAAGTTGGCGGAAAATAGAGGATATGTATCCATTTGTTAATGGGGCTGCTCAGGCACCCCCACTTGTGGCCGTTGTGGACAACCAGTTATTTGCTGTTGAGCATCTAACCAACATGGTGAAGAAGTACGACAAGGTAAAGAATGCCTGGGATGAATTGGGGAGGCTTCCAGTCCGGGCTGATTCTTCTAATGGATGGGGTTTGGCTTTCAAGGCTTGTGGGAAGCACCTTCTGGTCGTGGGTGGTCAGAGAGGTCCTGAAGGTGAAGCTGTTGTGCTGAATTCCTGGTGCCCTGCATCAGGGGTTAAAAATGGCACCTTAGATTGGCAGGTTCTTGCTGTGAAGGAGCATGTTGGGGTGTTTGTGTACAATTGTGCTGTTATGGGTTGTTGA 1386 0.4488 MNLTIEDPVIKRGKQEIHSNMGPPPASPFIAIAGHLHHALTPPLFSSNHAAVLCLRSERFSSFPFILSRPLEFGRGKFPGALVNWLEDEEKVKKFLKMNSREGVNDGRTRIEPNDSLLPGLIDDVALNCFAWVSRSDYASISCINKRYNKLIKSGYLYGLRKQLGLVEHWVYLVCDPRGWEAFDTMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELLDFAIWKYSLIFHRWVKCQGMNRPRCLFGSGSLGSIAIVAGGSDKNGNVLKSAELYDSSSGRWEQLPNMHTPRRLCSGFFMDGKFYVIGGMSSPAVSLTCGEEYNLETRSWRKIEDMYPFVNGAAQAPPLVAVVDNQLFAVEHLTNMVKKYDKVKNAWDELGRLPVRADSSNGWGLAFKACGKHLLVVGGQRGPEGEAVVLNSWCPASGVKNGTLDWQVLAVKEHVGVFVYNCAVMGC 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1180 461 Pfam Kelch motif 295 340 IPR006652 GO:0005515
Lele30g1180 461 Pfam Kelch motif 247 292 IPR006652 GO:0005515
Lele30g1180 461 FunFam F-box/kelch-repeat protein SKIP11 163 445 - -
Lele30g1180 461 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 112 461 - -
Lele30g1180 461 SUPERFAMILY Kelch motif 178 418 IPR015915 GO:0005515
Lele30g1180 461 Gene3D - 167 449 IPR015915 GO:0005515
Lele30g1180 461 SMART kelc_smart 307 359 IPR006652 GO:0005515
Lele30g1180 461 SMART kelc_smart 259 306 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1180 Lele-ChrLele30 14656876 14658931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1180 112 338 Miscellaneous Gene Families AT4G33900 25.424 2.43e-11 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1180 30 14656876 14658931 Lele09g1170 09 20781131 20790113 CCT
Lele30g1180 30 14656876 14658931 Lele10g1145 10 22756102 22766959 CCT
Lele30g1180 30 14656876 14658931 Lele11g1173 11 18958216 18967432 CCT
Lele30g1180 30 14656876 14658931 Lele12g0150 12 1145529 1153666 CCT
Lele30g1180 30 14656876 14658931 Lele31g1320 31 19234625 19236746 hybridization
Lele30g1180 30 14656876 14658931 Lele32g0219 32 1301267 1311554 hybridization