Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1179 ATGGCGGACACTGGAAATACTGAACTTTCACTTTCAACCTCTAAAACCCTCAACCCTTCCGATCCAATCAACGGTTCTCATCCCGCTGAAAACGCTCAAATCCATCAGAAATCTTCGTCTCCCGCCGCGCAGCCTTCCGACGATGTCGTCTCGGGCGAGAAACGGAAGCGCGAGGACTCAGACTCAGGGGTCTCGGATCCTTCCCTCAATCCCTTGTGGAAAACCAGCCTCTGTTCTTATTTCCGGCAACATGATGGCTCCTGCAGCCACAGCAGTGAGTGCTGCTATGCCCCCGGCGAAGAGGAGCTTCGGCCTCGGCCCGATAACACCTGGGACCCAACATCTGAGCGGGTGAAGAAGGCGATGAAATCCGATACGGGCGAGAAATGTACAGTTTCCTTGGGTGTTATGATGACTGAGGCTGTGGTCGATGATGCTGATGGCGAGGACAATGATGATTCCAATCACGCTCTTAGCAAATGCTTGGGTATACCTTTTAAATCTGCAAAGAAAAAGAAAGGCATGCTGGTAGGATTTGTCACTTTTGAAGATCAAGAGCAGTTGAAGAGCTCAACAAAGCTGGAAGGCAAAATAATTTGCAGCAAAAGATTAAAAGTTGCAGATGTCATTCCTCGATCATTTGAAAAGAAAAGTAACTCAAATGTCACTCTTTGTGCAGAATCTGCACAAAATGCAGATGCTGCATTAGCTAAGGAGAATACAGATGGGAATGTGGATAGTGAGACAAATGGTGCAAATTTGGCAAAAATTAAGCTACAAGGCATTTTGTTGCAGACTAGAAATGCTCGTAAAGCTTGTCCAAGTGGCGTTTCTCTTCCTGAGTGGATTCTCAAGTCTAGGGACATAGGTATTACTGGATCGCCAAGGGTAAATGGATATCGCAACAAGTGTGAATTTTCTGTTGGATATTCTGTAGAAGGAAAAATAACAGTGGGATTCATGCTTGGAAATTTCAGGACAAATGAGAAGGTTGATGATGCTGAAGATTCTGGTAGTATTTCAGAGGTCATACTTATGGTGCAGGTTTCTACAACGGGCTTTGATAATGAGCTAGTAACTGGTGAATTTGAGAAACTCACCCAAGCATTTGTTGCCGGAGCTAATGCATGTTCTCCATCACTGCCTCTCACGGCTCTGGTTGTACAGGAATATCCAATGTAG 1182 0.4552 MADTGNTELSLSTSKTLNPSDPINGSHPAENAQIHQKSSSPAAQPSDDVVSGEKRKREDSDSGVSDPSLNPLWKTSLCSYFRQHDGSCSHSSECCYAPGEEELRPRPDNTWDPTSERVKKAMKSDTGEKCTVSLGVMMTEAVVDDADGEDNDDSNHALSKCLGIPFKSAKKKKGMLVGFVTFEDQEQLKSSTKLEGKIICSKRLKVADVIPRSFEKKSNSNVTLCAESAQNADAALAKENTDGNVDSETNGANLAKIKLQGILLQTRNARKACPSGVSLPEWILKSRDIGITGSPRVNGYRNKCEFSVGYSVEGKITVGFMLGNFRTNEKVDDAEDSGSISEVILMVQVSTTGFDNELVTGEFEKLTQAFVAGANACSPSLPLTALVVQEYPM 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1179 393 ProSiteProfiles Zinc finger C3H1-type profile. 72 101 IPR000571 GO:0046872
Lele30g1179 393 MobiDBLite consensus disorder prediction 1 46 - -
Lele30g1179 393 Gene3D - 66 106 - -
Lele30g1179 393 MobiDBLite consensus disorder prediction 49 63 - -
Lele30g1179 393 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 341 391 IPR045850 -
Lele30g1179 393 MobiDBLite consensus disorder prediction 1 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1179 Lele-ChrLele30 14649845 14653453 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele30g1179 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1179 30 14649845 14653453 Lele09g1168 09 20768527 20775141 CCT
Lele30g1179 30 14649845 14653453 Lele10g1143 10 22739895 22743860 CCT
Lele30g1179 30 14649845 14653453 Lele11g1170 11 18943698 18946641 CCT
Lele30g1179 30 14649845 14653453 Lele12g0153 12 1167943 1172291 CCT
Lele30g1179 30 14649845 14653453 Lele31g1319 31 19224560 19231057 hybridization
Lele30g1179 30 14649845 14653453 Lele32g0220 32 1314741 1315726 hybridization