Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1177 ATGATGATACATTTTCTTTGGCTTTGGAGCATAAGGATTGATGGGTATCACAATGTGTGTGAAAAACTTGTACGATTGTCTTTTCAGTTGGAGGTTGTTTTTATTAATGCTGGTTCGTCAATGATGAGCATGTCTTTTGACTGGTGTGGAAGGGAAGGTCATATTCCAGTTCTGGTGGCGTTTCATGTTCTTAATCCCAGCGAGAATATGTGCAAAGAGAAAAAGCCTGTGGGTGAAGGACATGATGAGGTTTCGTGTCAAAGAACAGCTTCTCTTCCAGCTCACAAGGTTGATAATAATACAATGGGAATAAGTGAAGAGTCCATACATACTCGTCGCTGGAAGCGAGAGAATCTTTCACTGCAAATACCCTCAAGAACATCAGAAGAGTCTTCTCAAGATTTTGCAACAATCAAGATGCCTAAGACTCCAAGTCCTTCTCCAACTCCCAAGAGAGTTAATTTTCTGGTGACTTCTCTCTCTGTTGATACCTCCATTAATAAGTCTCCAGGACCTTCAGCATCAAGAGGAAGACCATCCATAAGAAGTCTCTTACCAAAACTGAGCTTTATTTCTCGGGCGTCATCAGATGTCGAAAAGGCTTCTACTGCAGCTTCAGAAGGTTCTTCTTCAGCCACTCGAGAAAAGCCTTCAATCTCAAGAACGTTGTCCCTTACTAAAATATTTACTCCCAGGATTAAGAGGACCTCATCTTTGCCAGTGGATGAATTTGCACATTCAAACTCAGAATCTGCTCATGCTGGAACTGTTGGCACTTCTTTGCAGAGAAGCTCTGCTCAGAGGCAGATAGTTCGCTCTCTTTCAGTGCCAGCCAACAATAAAGAGAAAAGCTTGACGAGAACGGATTCATTTTTCCGTGTTATTCCTTCCACCCCACGAGTGAAGGATGGAATTGAATTATCCACAGCATCCCCCACAAAGGATTCTGGTTCAGAAAACGATGTTGCTGGTGGTGAAGATATAGCTGAAGAAGAGGCTGTATGCAGAATTTGTTTGGTTGATCTATGTGAAGGGGGTGAAACTTTCAAGCTGGAATGCAGCTGCAAAGGTGAACTTGCTCTAGCACACCAAGAATGTGCTATTAAGTGGTTTGGCATCAAAGGAAACAAAACATGTGATGTGTGCAAGCAGGAGGTTCGGAACCTACCTGTCACTCTTCTCCGGATCCAAAGTGTCCGGGCTCGACATACTGGAGCAAGCTGGTCTCAGCTGGACAATGTGAATGAATATAGGGTTTGGCAAGAAGTGCCTGTTCTAGTCATTGTCAACATGCTTGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGCACTAATGCAATTGCCATATCTCTTCCGTTTTCATGCGTACTGGGTCTTCTCTCTTCCATGACGTCATCCACAATGGTGAAGAGCAGGTTCGTCTGGATATATGCATCAGCACAGTTTGCTCTGGTGGTTCTATTTGCTCATATATTTTTCTCCTTGGTAATTGCAAAAGATATCCATGTGCAGGCAATTCTGTCGATACTTCTTGCAACCTTCGCAGGGTTTGGTGTGGTAATGAGTGGAAGTTCAATTCTTACGGAGTTCTTCAGATGGAGAAGAAGATGGCAGGCTTCATCAGAGCAGAATAATAATGGCCCTCAGGTGATGGCACCTAATTCAGGCTCTTCCACGGCCAGGGCACAGAATCACCAAACCTCAAGTCAGATATTGTCACAGGCTAATAATGAGAGTGCTTCTTCCTAA 1761 0.4355 MMIHFLWLWSIRIDGYHNVCEKLVRLSFQLEVVFINAGSSMMSMSFDWCGREGHIPVLVAFHVLNPSENMCKEKKPVGEGHDEVSCQRTASLPAHKVDNNTMGISEESIHTRRWKRENLSLQIPSRTSEESSQDFATIKMPKTPSPSPTPKRVNFLVTSLSVDTSINKSPGPSASRGRPSIRSLLPKLSFISRASSDVEKASTAASEGSSSATREKPSISRTLSLTKIFTPRIKRTSSLPVDEFAHSNSESAHAGTVGTSLQRSSAQRQIVRSLSVPANNKEKSLTRTDSFFRVIPSTPRVKDGIELSTASPTKDSGSENDVAGGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFGIKGNKTCDVCKQEVRNLPVTLLRIQSVRARHTGASWSQLDNVNEYRVWQEVPVLVIVNMLAYFCFLEQLLVGKMGTNAIAISLPFSCVLGLLSSMTSSTMVKSRFVWIYASAQFALVVLFAHIFFSLVIAKDIHVQAILSILLATFAGFGVVMSGSSILTEFFRWRRRWQASSEQNNNGPQVMAPNSGSSTARAQNHQTSSQILSQANNESASS 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1177 586 MobiDBLite consensus disorder prediction 124 152 - -
Lele30g1177 586 MobiDBLite consensus disorder prediction 124 142 - -
Lele30g1177 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 390 IPR013083 -
Lele30g1177 586 ProSiteProfiles Zinc finger RING-CH-type profile. 327 389 IPR011016 GO:0008270
Lele30g1177 586 MobiDBLite consensus disorder prediction 244 263 - -
Lele30g1177 586 PANTHER OS02G0165000 PROTEIN 94 551 - -
Lele30g1177 586 MobiDBLite consensus disorder prediction 545 586 - -
Lele30g1177 586 Pfam RING-variant domain 335 382 IPR011016 GO:0008270
Lele30g1177 586 MobiDBLite consensus disorder prediction 196 218 - -
Lele30g1177 586 SMART ringv_2 334 383 IPR011016 GO:0008270
Lele30g1177 586 CDD RING_CH-C4HC3_MARCH 335 383 - -
Lele30g1177 586 SUPERFAMILY RING/U-box 331 386 - -
Lele30g1177 586 MobiDBLite consensus disorder prediction 303 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1177 Lele-ChrLele30 14639707 14647634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1177 332 389 C3H Transcription Factor Family AT2G37950 49.153 1.06e-12 65.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1177 30 14639707 14647634 Lele31g1318 31 19214788 19220572 hybridization