Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1176 ATGAACATTGCGAGCAGAATAGCAGCACAAGCACCGCCTCTTCTCTGCGCTCGTCCCGTTCCCATCTTCTCTTTCCGAGGTGTCCGCAAGTTGGGGTTTGTGCCCCAGTTAAAACAGAGTGGGAGACTGAACAGAAAATTGCCCATAACTATGGCTTGGAGTGCGGAGAATTCTGAGGTACGTGTTGAAAGCAAGATTGGAGTGGTTCGTCCAGCAGAGGATGCTTTTGCTGCAGAAGCAGTTGAAGCTTTGAAAGCTGGGAAGGTTATTGCTGTACCCACTGATACACTCTATGGGTTTGCTTGTGATGCTTGCTCGCTGGAAGCAGTTAACCGAATTTATGAGATTAAAGGACGTAAACATACAAGCCCCTTGGCAATTTGTGTTGGGGATGTGTCAGACATAGAGCGTTTTGCAGTAACTGACTATTTGCCTCACGGTCTGCTAGATTCCCTCCTTCCAGGTCCTGTTACTGTTGTGCTGAATCGAGGAGAATCAAGCATTCTTGAACGATCTTTGAACCCCGGACTTTATAGCATAGGGGTTAGAGTGCCTGACAGCAATTTCATTCGGGTCATTGCTCGTGGCTCAGGAACTGCCTTGGCCCTCACCAGTGCAAACCTAAGTGGACAGCCAAGTAGTGTTTGCATCAAGGATTTTGAGGACCTCTGGCGACATTGTGCCTATGTCTATGATGGTGGTTTGCTTCCATCAGGACGTGCAGGTTCCACTATTGTGGACCTCACCGTACCATCCAAATACAAGATACTCAGACCTGGAAGTGCAAAGGAAGAGACGGTGGTCATCTTGGAGAAGCATTCTCTGGTCGAAGAAGTAAATGAGCAGTGA 849 0.4817 MNIASRIAAQAPPLLCARPVPIFSFRGVRKLGFVPQLKQSGRLNRKLPITMAWSAENSEVRVESKIGVVRPAEDAFAAEAVEALKAGKVIAVPTDTLYGFACDACSLEAVNRIYEIKGRKHTSPLAICVGDVSDIERFAVTDYLPHGLLDSLLPGPVTVVLNRGESSILERSLNPGLYSIGVRVPDSNFIRVIARGSGTALALTSANLSGQPSSVCIKDFEDLWRHCAYVYDGGLLPSGRAGSTIVDLTVPSKYKILRPGSAKEETVVILEKHSLVEEVNEQ 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1176 282 Gene3D DHBP synthase 65 273 - -
Lele30g1176 282 ProSiteProfiles YrdC-like domain profile. 74 262 IPR006070 GO:0003725
Lele30g1176 282 SUPERFAMILY YrdC/RibB 77 267 IPR017945 -
Lele30g1176 282 FunFam YrdC N6-threonylcarbamoyltransferase domain containing 68 270 - -
Lele30g1176 282 PANTHER SUA5 64 273 - -
Lele30g1176 282 Pfam Telomere recombination 82 260 IPR006070 GO:0003725
Lele30g1176 282 TIGRFAM TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 77 266 IPR006070 GO:0003725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1176 Lele-ChrLele30 14636651 14638747 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1176 30 14636651 14638747 Lele31g1317 31 19211326 19213654 hybridization
Lele30g1176 30 14636651 14638747 Lele32g0221 32 1317179 1326146 hybridization