Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1168 ATGCCGCCCAAGTTCGATCCCTCACAGGTCGTCGATGTGTTTGTCCGCGTCACCGGAGGTGAGGTAGGTGCGGCCAGTTCCCTCGCGCCTAAGATTGGTCCTCTCGGTCTTTCTCCTAAGAAGATTGGTGAAGACATAGCGAAGGAGACTGCCAAGGACTGGAAGGGATTGAGAGTTACTGTTAAGCTCACCGTCCAGAACCGTCAGGCCAAGGATGTGCCATTTGGCCTGAAGGTTTCTGGATGCATTGCCAATGACCTTGAGGGATAA 270 0.537 MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKDVPFGLKVSGCIANDLEG 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1168 89 PANTHER 60S RIBOSOMAL PROTEIN L12 1 71 IPR000911 GO:0003735|GO:0005840|GO:0006412
Lele30g1168 89 Pfam Ribosomal protein L11, N-terminal domain 15 69 IPR020784 -
Lele30g1168 89 FunFam 60S ribosomal protein L12 1 75 - -
Lele30g1168 89 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 72 IPR036796 -
Lele30g1168 89 SMART rl11c 13 89 IPR000911 GO:0003735|GO:0005840|GO:0006412
Lele30g1168 89 Gene3D - 1 73 IPR036796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1168 Lele-ChrLele30 14606307 14607347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1168 1 71 Cytoplasmic Ribosomal Protein Gene Family AT3G53430 92.958 1.47e-43 137
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1168 30 14606307 14607347 Lele31g1309 31 19179140 19181083 hybridization
Lele30g1168 30 14606307 14607347 Lele32g0227 32 1357497 1358543 hybridization