Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1160 ATGAAGGAAGAAGCTGAGAAAAGCTTGGATCCACAACTATGGCACGCGTGCGCCGGCGGTATGGTTCAGATGCCATCTCTGAACTCTAAAGTCTTCTACTTTCCTCAAGGACACGCCGAACACGCCCAGGCCGGCGTCGATTTTGCGGCCTCCTTGAGGATTCCACCGCTCATTCTCTGCCGCGTGGCAGCTGTGAAATTCCTCGCAGACCCAGAAACCGACGAGGTCTTTGCCAAGATCAAGTTGATTCCTTTGATAAACTCCGAGCTAGATGACGGCGACGGCGACGAAAACACTCACGGCTCTGAAAATTCGGAGAAGCCCGCCTCTTTCGCCAAGACCTTAACCCAGTCCGATGCTAACAATGGTGGAGGCTTCTCTGTTCCGAGATACTGTGCAGAGACCATATTCCCGCGGCTCGATTACTCGGCGGAGCCCCCGGTTCAAACCGTGATTGCGAAGGACGTCCACGGGGAAATTTGGAAGTTCAGGCATATCTACAGAGGGACACCTCGCCGTCACTTGCTGACAACAGGGTGGAGTACTTTCGTCAACCAGAAGAAACTCGTAGCAGGGGACTCTGTCGTGTTCCTGAGGGCCAAAAATGGCGATCTCTGTGTGGGGATTCGCCGCGCAAAGCGTGGGATCGGCGTTGGATCCGACGGCATCTCCGGTTGGAGCTCCGGTCCCGGGAACTGTGTGGGGCCATATGGGGCTCTCAGCGTGTTGTTAAGAGAGGAGAACAAGCTTCTGCGATGCAATTCGAATGGTGGGAATTCAAATCCTGGGAGAGCAAGAGTGAGACCAGAATCTGTGATGGAAGCTGTGACACTTGCTGCGAGTGGTCAAGCATTCGAGGTTGTTTATTACCCACGAGCAAGTACTCCTGAGTTCTGTGTGAAAGCTGAGGCTGTTAAGGCAGCCATGAGAATCCAATGGTGTTCTGGGATGAGATTCAAGATGGCGTTTGAGACAGAGGATTCTTCCAGGATTAGCTGGTTCATGGGCACTGTTGCTTCTGTTCAAGTTGTTGATCCTATTCGCTGGCCCAATTCTCCTTGGAGACTTCTTCAGGTTACTTGGGATGAGCCAGATTTGTTACAGAATGTGAAGAGGGTTAGTCCATGGTTGGTTGAACTGGTATCGAACAGGCCGGTGATCCCTCTCATGCCGTTCTCTCCCCCCCGGAAGAAGATGCGGCTTCCTCAACACCCGGACTTCCCCTTTGACGGTCACTTTACGATACCGACCTTTCCAGGCGGCAACCCTCTCGGGCCCAGCGGCCCCTTGTGTTGTCTTTCCGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTCGGAATATCTCTTTCAGATCTCCACCTAAACAATAAATTGCAGTTGGGGCTGCTTTCGAATAACATTCAGCAGCTTGATGTGCATCCCGGGATTTCTAATGGCAATATAATGATGAGCCATGACAAGAAAAATGAGAGCTTGTCATGCTTGCTTACCATGGGAAATTCTAACAAGAGTTTGGAGAAATCTGATAATGTCAAGAGGCACCAGTTTCTGCTTTTTGGACAGCCAATACTTACTGAACAACAAATTTCTCAAAGCTGTCATGCCGAAGTGTGGTCTCAGAACTTCTCGCGTAAAAAGTTGCCAGATGAATGTAAGGATAAAGCAAAGAGCTTCTTGGGTGTATCCGAATCTGCAGTTCCGCAGCCGGGATTATCTTCTACAACCGACTTCTCTTGGCAACTCGGCTTGGATACGGGTCATTGCAAGGTTTTCATGGAGTCAGAAGACGTGGGGCGCACTCTAGACCTTTCATGTCTCAGCTCTTATGAAGAGCTGTACAGGAAACTGGCCGACATGTTTGGACTCGAAAGATCCGAGATGTTAAGCTGTGTGCTCTACCGAGATGCTTCTGGTGCTGTCAAGCGAACTGGAGAAGAACCCTTCTGTGACTTTATGAAAACAGCAAAAAGATTGACAATTCTGACCGATTCGGGCAGCAAAGATATTAGGAGGGCGTGGATTACGGGATCTCGAAATGGAGATCATGGACTGGACGCATCAAACAAGACAGGCTTTCTGAGCATATTTGCCTGA 2106 0.5028 MKEEAEKSLDPQLWHACAGGMVQMPSLNSKVFYFPQGHAEHAQAGVDFAASLRIPPLILCRVAAVKFLADPETDEVFAKIKLIPLINSELDDGDGDENTHGSENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFLRAKNGDLCVGIRRAKRGIGVGSDGISGWSSGPGNCVGPYGALSVLLREENKLLRCNSNGGNSNPGRARVRPESVMEAVTLAASGQAFEVVYYPRASTPEFCVKAEAVKAAMRIQWCSGMRFKMAFETEDSSRISWFMGTVASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNRPVIPLMPFSPPRKKMRLPQHPDFPFDGHFTIPTFPGGNPLGPSGPLCCLSDNAPAGIQGARHAQFGISLSDLHLNNKLQLGLLSNNIQQLDVHPGISNGNIMMSHDKKNESLSCLLTMGNSNKSLEKSDNVKRHQFLLFGQPILTEQQISQSCHAEVWSQNFSRKKLPDECKDKAKSFLGVSESAVPQPGLSSTTDFSWQLGLDTGHCKVFMESEDVGRTLDLSCLSSYEELYRKLADMFGLERSEMLSCVLYRDASGAVKRTGEEPFCDFMKTAKRLTILTDSGSKDIRRAWITGSRNGDHGLDASNKTGFLSIFA 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1160 701 Gene3D - 313 385 - -
Lele30g1160 701 SUPERFAMILY DNA-binding pseudobarrel domain 104 214 IPR015300 -
Lele30g1160 701 FunFam Auxin response factor 313 386 - -
Lele30g1160 701 SMART B3_2 111 213 IPR003340 GO:0003677
Lele30g1160 701 ProSiteProfiles PB1 domain profile. 589 669 IPR000270 GO:0005515
Lele30g1160 701 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Lele30g1160 701 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 668 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele30g1160 701 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Lele30g1160 701 Gene3D - 109 213 IPR015300 -
Lele30g1160 701 Pfam Auxin response factor 275 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele30g1160 701 FunFam Auxin response factor 109 213 - -
Lele30g1160 701 Gene3D - 588 673 - -
Lele30g1160 701 CDD B3_DNA 110 211 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1160 Lele-ChrLele30 14531483 14534472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1160 1 673 B3 DNA Binding Superfamily AT4G30080 60.844 0.0 778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele30g1160 B3 1.9e-21 CL0405