Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1154 ATGGCTGGAAAATCTGCAACGACTTCGACGACCTACTCGCCGTCTCCGACCACCCAGAAAACCAAGGCTCCTATTTTCAATGAAGATTGGGTCCGACCCGATGGCCGTGGCTTCCACCAGTGCAGGCCCGCCTTTTTCAGAACCGGTGCTGTGAATGCTGCCTCTGGATCTGCTTATGCAGAGTTTGGAAACACCAAGGTCATTGTATCTGTGTTTGGGCCAAGGGAGAGTAAGAAGGCCATGATGTACAGTGACATAGGGCGTCTAAATTGCAATGTAAGCTTTACTACATTTGCAACTCCAGTTCGCGGCCAGGGATTGGACAACAAAGAATACACTGCAATGCTTCACAAGGCTTTGGAGGGTTCAATAATGTTGGAAACTTTTCCCAAGACCACTGTGGATGTTTTTGCATTGGTACTGGAATCTGGTGGCAGTGATCTCCCAGTTGTCATATCATGTGCTAGCCTTGCCCTAGCAGATGCTGGAATAATGATGTATGACCTTATTGCTTCAGTTTCTGTGTCTTGTCTCGGTAAGAACCTTGTTATTGATCCTATTTCGGAGGAGGAAAGCTGTCAAGATGGAAGCTTAATGATAACTTGCATGCCTTCTCGTTATGAAATCACCCAGCTCACTGTCACTGGGGATTGGTCCACCCCAAAGATTAACGAGGGAATGCAGCTATGTTTAGATGCTTGTGCAAAACTTGCAAAGATCATGAGGTCATGTCTGAAAGAAGCTGCTCAAGGTGCAAATGGAAGAAGTTGGGTTTTTAAGAGGAATGCCTGGGAATCTGTCTCGCTTCATCCATCTCCCCTGTTTGTTGGAATACCTGAAAATATGGGCTTTGGAAATACAAGATCTGTAAGATTTCAAGACGATATTGAACAAGCAAACATCCCTGCAACTAACAGTGACAACGGGATCAAAGTTAAGTACAACATTGATGGAGTACAAATACCAGAGCCTAGCAGCAGCAAAATGGCTCAGAAGAAGGAGACAGCAGGGAAAACTGGGAAGTTCTTGGAAGGTAGAGTGTTGTCAAGAGTATTCTCAGAAGACTACGAAAGAGTGAAAAGAAAGATACTTGATCCTCGAGGACAAGCCATTCATCGATGGAACAAGATTTTCTTGGTGGCATGTTTGATACCTTTGTTTGTGGACCCTTTATTCTTTTACTTGCCAGTAGTTCGAGATGAAGTGTGCATTGAGATTGGAATAATACCTGAAGTTATCCTCACAATCATCAGAACAGTTGCAGATTTCTTTTACATGTTTCAGATTCTCATGAAGTTTCGTACAGCTTATGTCGCGCCTTCCTCTCGAGTATTTGGGAGAGGAGAACTTGTTATTGATTCTTCTAAGATTGCATTTAGGTACTTCAAAAAGAGTTTCTGGTTAGACTTTGTTGCTGCCATGCCTCTTCCACAGGTGTTGATTTGGCTTGTCATACCCTTCCTCAGGGGTTCTACCATGGCAAACACAAAAAATGTCCTTCGTTTCATCATCATCTTTCAGTATCTCCCTAGGCTCTTTCTTATTTTCCCTCTTTCATCACAAATTATTAAGGCTACCGGAGTCGTGACACAAACGGCATGGGCCGGTGCTGCTTACAACCTCATGCTTTATATGTTGGCAAGCCACGGTTTAGGTGCTATTTGGTACCTTCTATCAATTGAGCGACAGGAAGCATGCTGGAGAAGTGTTTGTGACCACGAAAAGTCATATTGTCAATATGGATATTTTGACTGCTACCGGATCAACGAAGCCAACAGGGTCGCCTGGTTCATTGCAAGTAATGTCACAAATTTATGCTCACCTGATGTCAACTTTTATCCCTTTGGCATGTTCGGTGATGCTGTCACTTCTCAAGTCACAAGCTCCCCTTTCTTCAACAAGTATTTCTACTGTCTTTGGTGGGGCTTAAGAAATCTCAGTTCTCTAGGACAAAATCTTCTCACTAGCACTTTTGTTGGAGAAATAGTGTTTGCCATCATAGTTGCCACCCTTGGATTGGTTCTTTTTGCCTTGCTTATCGGTAATATGCAAACATATCTTCAATCAACAACGGTCCGCTTAGAAGAATGGAGAGTCAAAAGAACTGATACAGAACAATGGATGCATCACAGGCAGCTACCTCCAGAACTAAGACAAGCTGTAAGAAAATATGATCAATATAAATGGTTGGCTACCCGAGGAGTTGATGAAGAAGCTCTTCTTAAAGGACTTCCCGTGGATCTTCGAAGAGACATCAAACGCCACCTTTGCCTTGACCTTGTCCGAGGAGTTCCATTATTTGATCAAATGGATGAGAGGATGCTGGATGCAATATGTGAGAGGCTGAAGCCTGCATTATGCACAGAGGGAACTTACCTTGTTCGTGAGGGTGATCCAGTGAATGAGATGCTGTTCATAATAAGGGGCCATCTGGATTCCTACACCACCAATGGAGGGCGAACCGGGTTCTTCAATTCATGCCAGATTGGTCCGGGCGATTTCTGTGGGGAGGAAATACTGACATGGGCATTGGACCCTAGACCAAGTGTGATACTTCCATCTTCCACAAGAACAGTAAAAGCCATCTCTGAAGTAGAAGCCTTTGCACTTATGTCAGAGGATCTCAAGTTTGTGGCGTCTCAGTTCAGAAGACTACACAGTAAACAGCTGAGGCACAAGTTCAAGTTTTACTCACACCAATGGCGAACATGGGCCGCTTGTTTCATCCAAGCTGCATGGAGAAGGTTCAAGAAAAGGAAACTGAGGGCTAAATTGAACCAAACTGATGCAGAGCCTGAAACACCAAGGTGTGGTGGCTCATCAGGCTTTGTTGTGTATGGATCGATGATGGGTAGGAGCACTGTAAAAGGGGCTAATATGCATTCCGACACAGTTTCTGGGGTTGTAAGCCCTCTTCGGAAGCCTGAAGAACCAGATTTTACTGTTGATGAGTAA 2955 0.4423 MAGKSATTSTTYSPSPTTQKTKAPIFNEDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCNVSFTTFATPVRGQGLDNKEYTAMLHKALEGSIMLETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLIASVSVSCLGKNLVIDPISEEESCQDGSLMITCMPSRYEITQLTVTGDWSTPKINEGMQLCLDACAKLAKIMRSCLKEAAQGANGRSWVFKRNAWESVSLHPSPLFVGIPENMGFGNTRSVRFQDDIEQANIPATNSDNGIKVKYNIDGVQIPEPSSSKMAQKKETAGKTGKFLEGRVLSRVFSEDYERVKRKILDPRGQAIHRWNKIFLVACLIPLFVDPLFFYLPVVRDEVCIEIGIIPEVILTIIRTVADFFYMFQILMKFRTAYVAPSSRVFGRGELVIDSSKIAFRYFKKSFWLDFVAAMPLPQVLIWLVIPFLRGSTMANTKNVLRFIIIFQYLPRLFLIFPLSSQIIKATGVVTQTAWAGAAYNLMLYMLASHGLGAIWYLLSIERQEACWRSVCDHEKSYCQYGYFDCYRINEANRVAWFIASNVTNLCSPDVNFYPFGMFGDAVTSQVTSSPFFNKYFYCLWWGLRNLSSLGQNLLTSTFVGEIVFAIIVATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPPELRQAVRKYDQYKWLATRGVDEEALLKGLPVDLRRDIKRHLCLDLVRGVPLFDQMDERMLDAICERLKPALCTEGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCQIGPGDFCGEEILTWALDPRPSVILPSSTRTVKAISEVEAFALMSEDLKFVASQFRRLHSKQLRHKFKFYSHQWRTWAACFIQAAWRRFKKRKLRAKLNQTDAEPETPRCGGSSGFVVYGSMMGRSTVKGANMHSDTVSGVVSPLRKPEEPDFTVDE 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1154 984 FunFam Cyclic nucleotide-gated ion channel 1 764 882 - -
Lele30g1154 984 ProSiteProfiles cAMP/cGMP binding motif profile. 766 863 IPR000595 -
Lele30g1154 984 FunFam Exosome complex component RRP41-like 11 250 - -
Lele30g1154 984 Gene3D Jelly Rolls 764 884 IPR014710 -
Lele30g1154 984 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 355 979 - -
Lele30g1154 984 MobiDBLite consensus disorder prediction 957 984 - -
Lele30g1154 984 CDD RNase_PH_MTR3 41 247 - -
Lele30g1154 984 Gene3D Helix hairpin bin 694 757 - -
Lele30g1154 984 SUPERFAMILY Ribosomal protein S5 domain 2-like 26 193 IPR020568 -
Lele30g1154 984 SUPERFAMILY Voltage-gated potassium channels 366 688 - -
Lele30g1154 984 MobiDBLite consensus disorder prediction 1 24 - -
Lele30g1154 984 PRINTS EAG/ELK/ERG potassium channel family signature 546 556 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele30g1154 984 PRINTS EAG/ELK/ERG potassium channel family signature 429 438 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele30g1154 984 PRINTS EAG/ELK/ERG potassium channel family signature 729 736 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele30g1154 984 PRINTS EAG/ELK/ERG potassium channel family signature 661 672 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele30g1154 984 PRINTS EAG/ELK/ERG potassium channel family signature 679 688 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele30g1154 984 PRINTS EAG/ELK/ERG potassium channel family signature 635 652 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele30g1154 984 SUPERFAMILY Ribonuclease PH domain 2-like 166 249 IPR036345 -
Lele30g1154 984 SMART cnmp_10 766 897 IPR000595 -
Lele30g1154 984 FunFam Cyclic nucleotide-gated ion channel 1 693 757 - -
Lele30g1154 984 Gene3D - 397 690 - -
Lele30g1154 984 SUPERFAMILY cAMP-binding domain-like 696 891 IPR018490 -
Lele30g1154 984 CDD CAP_ED 766 897 IPR000595 -
Lele30g1154 984 Pfam Cyclic nucleotide-binding domain 789 876 IPR000595 -
Lele30g1154 984 Gene3D - 18 253 IPR027408 -
Lele30g1154 984 Pfam 3' exoribonuclease family, domain 2 168 228 IPR015847 -
Lele30g1154 984 Pfam Ion transport protein 374 693 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lele30g1154 984 Pfam 3' exoribonuclease family, domain 1 40 164 IPR001247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1154 Lele-ChrLele30 14462007 14472079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1154 340 983 Ion Channels AT2G28260 75.932 0.0 1019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1154 30 14462007 14472079 Lele31g1292 31 19043499 19054074 hybridization
Lele30g1154 30 14462007 14472079 Lele32g0244 32 1495538 1504532 hybridization