Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele30g1150 | ATGGATGCTCGTGCTTACCGGGCTATGATGAAGAAAAAACCAAAGATAGATTGTCCTGAGGAGACAAATGGTAAAGAGAATTTAATTCAAGAAGGTGGCAACAATGTTGAGGACAAGATTGATGAGCACTTCAAAGGGAGTAATTTAGATTGTGAAGAAGTTTCCAACAACGGAATGCTACCATCTGATGATGCCAAGGAGTTAGTTAACCTGTCTGATGTTGAGGATAGAGGTGAAACTGAAGCCACCATCGCCGCAGAAATTTCTGAGAAAGGTGTTGACTGCGCCCCTTCAAATGATGTCTCTACAGAGATCCCAGCGGATGATGGAAAAATATGTCTCATTTGCAAACGCGGTGGGCGGCTCTTATTCTGCGATGGAAAAGAATGTGGTGGATGCTACCATTTTTCTTGTCTTGAACCTCCCATGGTGGATGCTCCCCTTGGGGTTTGGCACTGTCACCTCTGCTTGAAGAAGAAGATAGAGTTAGGTGTATATTCTGTATCTGAGGGAGTAGAATCAATTTGGGATGCAAGAGAAGTCAAGGTGTCTCATGCTGATGGATGGACAACTGAGAAACGTTTTCATGTGAAGTATAAAGGCCTTGCTCATGTTCACAACCGTTGGGTCCCAGAAAGTCAGTTACTTCTAGAAGCTCCTCCATCACTGCTTGAGAAATTTAATCAGAAAGATCAGGCCTTAAAGTGGAAGCAAGAATGGAGGTTACCTCATTGCTTGCTTCAGAAGAGAGCATTAATCTTTGCCCAGCGGGATGGTGATCCCGGGAATGGCCAAGCTGTTGGTAATTCTGTCTGTCACTATGAATGGCTTGTTAAATGGCATGGTCTTGGTTATGAACATGCATCATGGGAGCTGGACAATGCTTCGTTTCTTCGTTCGCTTGAAGGTCAGAGGCTAATTAAAGACTATGAAGATTGTCATCAGAGGTCGAAGAGAGCTCCTTTATCATCCAAAGTAGATAAGGTTTTTGATGGTTCAGGAAATAAGCCTGTCCTTGAGAATGAAGAGGTACTGAGAAAACGTGCAAAGGTATTTGATGCTGATCAGCCTTATTCAAAACGTGAAGGTGAAAAATTATTTGCTGGAAACAAGGAAGAAAGACCTCAAGGCAATGATGTTGAATTCCTGAAAGCAAGGAAATCGCGTGAAGAGCAAAGGAGCTCACATCTCTTTCTGAAGTCAGAAATAGCTAAGCTTTGTGAAATCCTTCATGTCCCAGATAATGTCAAGAGGATGGCTGATGAATTTCTTGAGTATGTCATGAACAACCATCATGTGGATAGTAGTACTCTTCCAAAGTCAATATTGGAGGCTTTTCAAATTTCTCTGTGTTGGATTGCAGCTTCTTTGGTAAAGCACAAGATTGACCATGAAGCTTCCCTTATGCTTGCAAAACAGCATTTAAAATTTGATTGTTGGAAGGATGTGGCAAACATAATTTATTCAATGTTGTGGTGTTTGAAGAACCTATTTTTGCATCGAACAGGAAATTACAATGTCACTGACTCTCCAAAAGCTTCTCCATCCGAATTATCTGGTAAGAATTATTCCTGTACGAGCTTGGCACTAGAGGTTGAATTAGCTAAGAAAGATGTCTTAGAAAGCATTAAAGAAATTCAAAAGAAGTGCCAAAAGACGCTGAGGAAGTTAGTTCTTAAGCATCAAGAAGAAAAGAACAAGCTGGATGCAACATACGAGGAAAAAAAGGCACATCTTGAGAGAGAATACAAAATAGAATCAGCCGTTATTCGGTACTGTGCTCCCAATGATGTGATGAGATCAGAAAAGCTTAAGGATTTAGATATCGAATATACAGGAAGAATTGAACATTTGAAGCATCAGCATGAAATGCATCTCAAAGATCTTGAGAATGTCCAATCGATGGCAAGGAAAATGTTACAAAATAAGGAGGCCAGTTGGGTGGAAGATGTGAAGTCTTGGGCACAAGATCAATTGTTAAACACACTTCCTTCGAAAGAACATGGGAATGGGATAGAATCCTTGAAGACTAGTGAGCAAGCTGAGCCTTATAATGATCCAAAGAATAGAGGCCTTGTGTCCAATCTTGTTACTGAAGATACAAATTTTGATAGAATACTTGAAGCCATGACTGGGACTGGGGTTGGATCATCTAGAACTCCTGAAATCATCTCCCCCGTGGTTGTACAATGCAGTAATCCGGTTGAAGGGCAAACTCCTCCAGTTGAGATTGCCAGTGCTTTTGAGGGCCATGATGGAGCTCAAAATGTATGTAATAGTCAAGGGAAAATGATCTCTGTGCATTCCCATTCCCAAGAACATAATGTCAACGGAGCCACATGCATGGTTAACGAAGGGGAAGGACATGATATTTTTAATGATGGTTGTAGGGAGAAAACTGTGCCTGATGGTTTAGAGAAGGATATAACTTTGGAACCTCCTTCATCCAGGGAACTAATTTCTGATGGAAGTCCATTGAATGTTTCAGATAGAGAGTTATCATCAAGACAGTGTGAAAGTCCACTATTGCCAGATCAGCAAACTTCTGATGGAGTCTCATTACACATGCACGATGGGCAGGTTTCAATTGAAGTGCCTGAACCTAGTCGTGGAATAGTTGAATGTTATAATGGCAGAGAGCACCAAACAGATGTGGTATTGTTGCATCAAACTGCCACATCAGAGGAGCAGAAACAAATGTCAAGAACCATGAACAATAACACTTTTTCCCAGGCACTACAAGATTCACATGCCTCTTTATTACCATCCCCCAGAATGGTTGATAAAGATCCCACAGTGGGAGAAATACAGAACTCTTCCAGACCAGTTGAACTGTCTTCTCATCCAGTTGATGCTATTCCAGCTGATCAATCTAATCCCGAGTCAGTCATGGAGCCTCAAGAGCAGATGCAGCAATTACCATTTGTAGAGTCCCTTGCTTCCAACCAGGATACAGCTGGAGAAATGCAGATCTCAACTCAGCAAGTTGAGGCAGCATCTACTCCTTTTGATGCTTTACCAGCTGGTGAATTCAATCATGACCCAGTCAGGGAGCCTCTAGAGCAACCACAACAATTACCTTCTACGGAACCCCTTGCTTCTAACCTGGACACTTCTGGAGAGTTGCTTAACACTTCCCAGCAAGTTGAGCCAGTATGTCGTCAAGTTGATGTGGCACAAACTAATGGATTGAATCCTGAGTCACTGGTCGGGGAGCTTCTACAGCAGATGCTGCAACTTCCACCTGCAGAGTCCCCTAATTCCACCCATGATCGATCTATGGCACCTGAAATTGAACTTCGGTCAAATAATGAAGATTTTCTGTCTGGCCATGTTCCCCCTGCATCAATGGAGGTTACAAATCAGGCCGTTGTTCATACTTCCTCAAATTCTGAACCTCATTCACATTCACCTGTTAGTGAATTCAGAACGCAATCATTAGACACGATAAATGTGTTCGCTCCTTCAGAGATCAATAATCAGCTTAGACAAACTGCAACCCAATCAATGAACAGGATGCATTCACCTTTCGTCTCCGATCCATTAAAGAATGAATTGGACAGATTACATAAAGAATCAGAGCAAACCATGAAATACTATGAAGATATGAAATTGCAGTTGAAATCTGATTGCGAGAGAGAACTCGAGGAAGTTCGCAGAAAGTATGATATCAAGTTACAGGAGAGTGAGCTTGAGTTTCAACAGAAAAAGAAGAACCTGGATACAAGTCTCAACTTAGTTCTGATGAATAAGATGTGGGCAGAGGCTTTTAGGTCTAAATGCATGGATCTTAGAGCATCTGGGGCATCAGGAATGCAGCAAGATTCAGGTTTCGCACCACAATTGACTTGGCTTTCAAGACAGCAAAGAGATATGAGGCCTTCCCTTGTTGCAAGTCCACTTCTTGGGGCTCCTGCATCTACCCCGCAACATTTTGCCACCGCTGCTACCTCTCGGACCATATCGCCACCTCATGTATCCAGTATGCCGATTTTTATGGCGCCTATGCCTGCTCCGGCTAGCTCTTCACCCATGGTGCCACTTATATCCTCTCCAGCTATCTCACAGACCACAGCACCGCCTCTACCGGCTGCTTACACTGCACCTCCAAGGCCACCTCTGCCACCTATATCCTCTCCAGCTATCTCACAGACCACAGCACCGCCTCTACCGGCTGCTTACACTGCACCTCCAAGGCCACCTCATATCAACTCCATTTCTCCATTGGTAAATCATCAAGTTGGTAGTGGGTTCCGTAGCACTCCACCCCATCTCCAGCCTTATAGACCCTCAACATCTTTGCCTGATTGGAGTCAACAAGCTCCTAATAACATTCCTATAATGCCCTCATTACCTAAACATCCTCGACCAACACTTCCGACCAATAATATATCTGATCCTCATAATAGAGTTCACCGGCCTGAAATTCCTGTAGTGTTATCCAATCCTAGCTTATCAGCCAGGGAGCCAGCTATGGATGGTAATTCTCAACTGGGTATGAATCTGGCAAATTCTCTGTTACGATCCTCGAATGCGACATCATTGCAGCAATCTGAGCTTGGCACCGCTAGAAGAGTGCAGGATGACTCTGTTCGTCTAGCCATGTCGCCTCACATAGTCTGTTTGTCAGATGATGACTAA | 4641 | 0.432 | MDARAYRAMMKKKPKIDCPEETNGKENLIQEGGNNVEDKIDEHFKGSNLDCEEVSNNGMLPSDDAKELVNLSDVEDRGETEATIAAEISEKGVDCAPSNDVSTEIPADDGKICLICKRGGRLLFCDGKECGGCYHFSCLEPPMVDAPLGVWHCHLCLKKKIELGVYSVSEGVESIWDAREVKVSHADGWTTEKRFHVKYKGLAHVHNRWVPESQLLLEAPPSLLEKFNQKDQALKWKQEWRLPHCLLQKRALIFAQRDGDPGNGQAVGNSVCHYEWLVKWHGLGYEHASWELDNASFLRSLEGQRLIKDYEDCHQRSKRAPLSSKVDKVFDGSGNKPVLENEEVLRKRAKVFDADQPYSKREGEKLFAGNKEERPQGNDVEFLKARKSREEQRSSHLFLKSEIAKLCEILHVPDNVKRMADEFLEYVMNNHHVDSSTLPKSILEAFQISLCWIAASLVKHKIDHEASLMLAKQHLKFDCWKDVANIIYSMLWCLKNLFLHRTGNYNVTDSPKASPSELSGKNYSCTSLALEVELAKKDVLESIKEIQKKCQKTLRKLVLKHQEEKNKLDATYEEKKAHLEREYKIESAVIRYCAPNDVMRSEKLKDLDIEYTGRIEHLKHQHEMHLKDLENVQSMARKMLQNKEASWVEDVKSWAQDQLLNTLPSKEHGNGIESLKTSEQAEPYNDPKNRGLVSNLVTEDTNFDRILEAMTGTGVGSSRTPEIISPVVVQCSNPVEGQTPPVEIASAFEGHDGAQNVCNSQGKMISVHSHSQEHNVNGATCMVNEGEGHDIFNDGCREKTVPDGLEKDITLEPPSSRELISDGSPLNVSDRELSSRQCESPLLPDQQTSDGVSLHMHDGQVSIEVPEPSRGIVECYNGREHQTDVVLLHQTATSEEQKQMSRTMNNNTFSQALQDSHASLLPSPRMVDKDPTVGEIQNSSRPVELSSHPVDAIPADQSNPESVMEPQEQMQQLPFVESLASNQDTAGEMQISTQQVEAASTPFDALPAGEFNHDPVREPLEQPQQLPSTEPLASNLDTSGELLNTSQQVEPVCRQVDVAQTNGLNPESLVGELLQQMLQLPPAESPNSTHDRSMAPEIELRSNNEDFLSGHVPPASMEVTNQAVVHTSSNSEPHSHSPVSEFRTQSLDTINVFAPSEINNQLRQTATQSMNRMHSPFVSDPLKNELDRLHKESEQTMKYYEDMKLQLKSDCERELEEVRRKYDIKLQESELEFQQKKKNLDTSLNLVLMNKMWAEAFRSKCMDLRASGASGMQQDSGFAPQLTWLSRQQRDMRPSLVASPLLGAPASTPQHFATAATSRTISPPHVSSMPIFMAPMPAPASSSPMVPLISSPAISQTTAPPLPAAYTAPPRPPLPPISSPAISQTTAPPLPAAYTAPPRPPHINSISPLVNHQVGSGFRSTPPHLQPYRPSTSLPDWSQQAPNNIPIMPSLPKHPRPTLPTNNISDPHNRVHRPEIPVVLSNPSLSAREPAMDGNSQLGMNLANSLLRSSNATSLQQSELGTARRVQDDSVRLAMSPHIVCLSDDD | 1546 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele30g1150 | 1546 | MobiDBLite | consensus disorder prediction | 820 | 851 | - | - | |
| Lele30g1150 | 1546 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 170 | 239 | IPR000953 | - | |
| Lele30g1150 | 1546 | SUPERFAMILY | Chromo domain-like | 129 | 233 | IPR016197 | - | |
| Lele30g1150 | 1546 | Gene3D | - | 1178 | 1260 | - | - | |
| Lele30g1150 | 1546 | Coils | Coil | 1208 | 1232 | - | - | |
| Lele30g1150 | 1546 | Gene3D | - | 253 | 312 | - | - | |
| Lele30g1150 | 1546 | MobiDBLite | consensus disorder prediction | 933 | 965 | - | - | |
| Lele30g1150 | 1546 | PANTHER | HELICASE PROTEIN MOM1 | 1 | 1546 | IPR039322 | GO:0031507 | |
| Lele30g1150 | 1546 | SUPERFAMILY | Chromo domain-like | 255 | 312 | IPR016197 | - | |
| Lele30g1150 | 1546 | MobiDBLite | consensus disorder prediction | 1010 | 1035 | - | - | |
| Lele30g1150 | 1546 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 106 | 164 | IPR013083 | - | |
| Lele30g1150 | 1546 | Coils | Coil | 554 | 574 | - | - | |
| Lele30g1150 | 1546 | ProSitePatterns | Zinc finger PHD-type signature. | 113 | 156 | IPR019786 | - | |
| Lele30g1150 | 1546 | Gene3D | - | 171 | 234 | - | - | |
| Lele30g1150 | 1546 | SUPERFAMILY | FYVE/PHD zinc finger | 107 | 160 | IPR011011 | - | |
| Lele30g1150 | 1546 | MobiDBLite | consensus disorder prediction | 815 | 851 | - | - | |
| Lele30g1150 | 1546 | MobiDBLite | consensus disorder prediction | 11 | 30 | - | - | |
| Lele30g1150 | 1546 | ProSiteProfiles | Zinc finger PHD-type profile. | 110 | 159 | IPR019787 | - | |
| Lele30g1150 | 1546 | SMART | PHD_3 | 112 | 157 | IPR001965 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele30g1150 | Lele-ChrLele30 | 14423346 | 14434540 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele30g1150 | 111 | 280 | Core DNA Replication Machinery Family | AT4G14700 | 26.554 | 6.75e-07 | 52.4 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele30g1150 | 30 | 14423346 | 14434540 | Lele31g1286 | 31 | 18989704 | 19007625 | hybridization | |
| Lele30g1150 | 30 | 14423346 | 14434540 | Lele32g0248 | 32 | 1531818 | 1541345 | hybridization |