Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1142 ATGAACGACATAATCAGGAGGGTTGCTTTGGCTTTCATTGTTGCATTAAGCTGCTATTCGGAGCAAGTTTCATGTCAGAGCACCAATCAAAGCCAAGCTGCGGTTCAGCTCGTAGCCCAGGCCGTTTACGGAAGCATGTCTAGTTTCACGGGCGTCTTCAAGGATGAAATAAAAAAGAATTTGGGTTTCTGCATCGTTGATGTAGATGCTGATTGGGATGGGGCGTTTAATTTCACCAATGATCTGACATTTTTGACCTCATGTTCCCAATCTTTAAAAGGAGATATTTCACAGCGCATATGCACAGCAGCAGAAATCAAGTTATATGCCAGTGGTTTTGACATAAAGTCAAAGAGCCAATCTAACAACTTGCAGCCCAACAAGAACTGCAACTTGAGCGTCTGGCTTAATGGGTGTGAGCCTGGATGGGGCTGTATTGCTGCTGAGAAAGTTCAACTTAACAATACTAAGGACATCCCTGACAGGTCTACTGACTGTCAGCCTTGTTGTCCGGGTTTCTTTTGCCCACGCGGCATTACTTGCATGATACCTTGCCCCTTGGGTTCTTACTGCCCACGTGGACAGCTCAATCAAGCTACGGGAATATGTGAACCGTATCATTATCAGCTACCTGCTGGAAAGACAGACCACAGTTGTGGGGGAGCAGATGTTTGGGCAGACATTTCAAGCAGTTGGGATGTTTTCTGTTCATCTGGATCTTACTGTCCGTCCTCCATCCAAAAAAATCCTTGCACTCAGGGACATTATTGCAGGACGGGTTCAACCCATCAAGAAAGTTGTTTCAAATTGGCGAGTTGTAAGCCTCAGTCAGCTAATCAAAATATAACTGCATATGGTGTCATGGTTTTTGCTGGCTTGAGCTTCTTGCTTATCATCATATATAATTGTTCTGACCAAGTTCTTGCAACTCGAGAAAGAAGAATAGCAAAATCAAGAGAAAGGGCTGCTGCGAGTGTAAGAGAAACACAAGCACGTGAAAAATGGAAATCAGCTAAAGACATTGCTAAGAAGCACGCAGTAGGACTGCAAAGTTCTTTATCACGTACGTTTTCTCGTAGAAAATCTATGAAGGGAGATCTGAAAGCTTTTGGTTCTAAATCTGCATCAGAAACTCCCTTTCCACCTGCGCCACCAGCAGGTGCTGGTAAATCATCTGCAGCATCAAAAGGAAAAAAGGATAAAACTAGCCTCACAAAAATGATCCAGAACATTGAGGAAGACCCTGATAGTCAGGAAGGCTTTCATGTTGAGATAGGAGATAAAAATATCAAAAAACAAGCACCAAAAGGCAAGCAACTGCATACGCAAAGCCAAATTTTTAAGTATGCGTATGGTCAAATTGAAAAAGAAAAGGCTATGCAGGAACAAAACAAGAACCTGACCTTCTCTGGAGTTATCTCAATGGCTAGTGATATTGAGATCAGGAAGAGGCCTACAATTCAGGTTGCTTTCAAAGATTTAACTCTCACTTTGAATGCCAAAAACAAGCATCTTCTAAGATGTGTGACTGGGGAACTAAATCCTGGTCGAGTTTCAGCAGTCATGGGCCCATCTGGGGCTGGTAAAACAACATTTCTTTCTGCTTTAACTGGAAAAGCAACTGGATGTCATACGACTGGCTTAGTTCTTATAAATGGCAAGGTTGAATCTATCCGGTCATACAAGAAGATCATTGGGTTTGTGCCACAAGATGATATTGTGCATGGCAATTTGACAGTAGAAGAGAATCTGTGGTTCAGTGCCAGATGCAGACTTTCAGCTGATCTACCGAAAGCAGAGAAGGTTCTAGTAGTTGAAAGAGTTATTGAGTCGTTAGGTCTGCAAGCAATCCGAGATTCTCTGGTTGGAACGGTGGAGAGGCGTGGAATCTCTGGAGGTCAAAGAAAACGAGTGAATGTAGGACTGGAAATGGTTATGGAACCTTCACTCCTGATTTTAGATGAACCAACATCTGGTTTAGATAGTTCATCTTCTCAGTTATTGCTTAGAGCACTTAGACGAGAGGCTCTAGAGGGTGTAAATATATGCATGGTCCTTCACCAACCAAGTTACACACTGTTCAGGATGTTTGATGATTTTATACTACTCGCTAAAGGTGGTCTTATAGTGTATCTTGGACCAGTGAAGAAAGTTGAAGAGTATTTTTCCAGCTTGGGAATTGTTGTTCCTGATCGTGTTAATCCTCCAGATTATTACATTGACATTTTAGAAGGGATAGTAAAACCAAGCTCAAGCACAGCAGTAAACTATAAACAACTACCTGTTAGATGGATGCTTCATAATGGGTATACTGTTCCTCTGGACCTGCTTCAGGGTGTTGAAGGAATGGAAGGCGCAAGTAGTGAAAGTTCCACCCATGGGGCAGCTACTCCAGCAGCAGAAACTGAAGATCCGTCTTTAGCTGGGGAAATTTGGCAGGATGTAAAAGTCCATGTTGAGAAGAAGAAAGACTACCTTCGATCTACTTTCTTTACATCAAATGATTTATCAAATCGGGTAACCCCTGGAGTCTTCCAACAATACAGATACTTTCTTGGAAGGTCTGGTAAACAGCGGCTACGAGAAGCTAGAACACAGGCTGTAGATTTTCTAATTTTGTTACTAGCTGGAATATGCTTAGGAACACTTGCCAAAGTGAGTGATGAAACGTTTGGAGCAAATGGTTACACATATACTGTTATAGCAGTATCACTCCTATGCAAGATCGCAGCTCTGAGAACATTTTCACTGGATAAGTTGCACTACTGGAGAGAGAGTGCATCTGGCATGAGTAGCCTGGCTTACTTTCTTGCAAAGGATACAGTTGATCATTTTAATACACTCATAAAGCCTGTGGTCTATCTCTCAATGTTCTATTTCTTCAACAATCCGAGATCCTCTGTTGTAGATAACTACTTTGTTTTGGTGTGCTTGGTGTACTGTGTCACTGGCATAGCTTATATATTGGCGATCTCACTTGAACCTGGTCCTGCCCAATTGTGGTCGGTGTTACTTCCAGTAGTTTTGACACTTATAGCAACCAGTGATAGTGTAGCTGAGAGCTCATTCATGAGCAAGGTAGCTGAAGTTTGCTATGCAAAGTGGGCTCTAGAAGCATTTGTGATATCAAACGCTAAAAGATATGCTGGGGTTTGGTTAATAACCCGATGTGGTGCACTAAATGTTCGTGGCTATGATCTCAACAACTGGTATCAATGTCTTATTCTTCTTGTGGTAACCGGAGTGCTTAGTCGCATTGTGGCATTCTTTTGTATGATGACTCTCCAGAAGAAATAA 3297 0.4225 MNDIIRRVALAFIVALSCYSEQVSCQSTNQSQAAVQLVAQAVYGSMSSFTGVFKDEIKKNLGFCIVDVDADWDGAFNFTNDLTFLTSCSQSLKGDISQRICTAAEIKLYASGFDIKSKSQSNNLQPNKNCNLSVWLNGCEPGWGCIAAEKVQLNNTKDIPDRSTDCQPCCPGFFCPRGITCMIPCPLGSYCPRGQLNQATGICEPYHYQLPAGKTDHSCGGADVWADISSSWDVFCSSGSYCPSSIQKNPCTQGHYCRTGSTHQESCFKLASCKPQSANQNITAYGVMVFAGLSFLLIIIYNCSDQVLATRERRIAKSRERAAASVRETQAREKWKSAKDIAKKHAVGLQSSLSRTFSRRKSMKGDLKAFGSKSASETPFPPAPPAGAGKSSAASKGKKDKTSLTKMIQNIEEDPDSQEGFHVEIGDKNIKKQAPKGKQLHTQSQIFKYAYGQIEKEKAMQEQNKNLTFSGVISMASDIEIRKRPTIQVAFKDLTLTLNAKNKHLLRCVTGELNPGRVSAVMGPSGAGKTTFLSALTGKATGCHTTGLVLINGKVESIRSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQAIRDSLVGTVERRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFRMFDDFILLAKGGLIVYLGPVKKVEEYFSSLGIVVPDRVNPPDYYIDILEGIVKPSSSTAVNYKQLPVRWMLHNGYTVPLDLLQGVEGMEGASSESSTHGAATPAAETEDPSLAGEIWQDVKVHVEKKKDYLRSTFFTSNDLSNRVTPGVFQQYRYFLGRSGKQRLREARTQAVDFLILLLAGICLGTLAKVSDETFGANGYTYTVIAVSLLCKIAALRTFSLDKLHYWRESASGMSSLAYFLAKDTVDHFNTLIKPVVYLSMFYFFNNPRSSVVDNYFVLVCLVYCVTGIAYILAISLEPGPAQLWSVLLPVVLTLIATSDSVAESSFMSKVAEVCYAKWALEAFVISNAKRYAGVWLITRCGALNVRGYDLNNWYQCLILLVVTGVLSRIVAFFCMMTLQKK 1098
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1142 1098 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 489 731 IPR003439 GO:0005524
Lele30g1142 1098 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 238 1086 - -
Lele30g1142 1098 Pfam ABC-2 type transporter 687 1098 IPR043926 GO:0140359
Lele30g1142 1098 Pfam ABC transporter 509 658 IPR003439 GO:0005524
Lele30g1142 1098 Gene3D - 478 726 IPR027417 -
Lele30g1142 1098 CDD ABCG_EPDR 487 713 - -
Lele30g1142 1098 FunFam ABC transporter G family member 24 483 725 - -
Lele30g1142 1098 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Lele30g1142 1098 MobiDBLite consensus disorder prediction 319 340 - -
Lele30g1142 1098 ProSitePatterns ABC transporters family signature. 630 644 IPR017871 GO:0005524|GO:0016887
Lele30g1142 1098 MobiDBLite consensus disorder prediction 785 804 - -
Lele30g1142 1098 SMART AAA_5 515 716 IPR003593 -
Lele30g1142 1098 MobiDBLite consensus disorder prediction 352 403 - -
Lele30g1142 1098 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 727 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele30g1142 Lele-ChrLele30 14370301 14376052 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1142 516 719 Calmodulin-binding Proteins AT2G36910 27.803 1.22e-10 63.9
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1142 30 14370301 14376052 Lele09g1145 09 20565693 20567824 CCT
Lele30g1142 30 14370301 14376052 Lele10g1115 10 22526215 22531594 CCT
Lele30g1142 30 14370301 14376052 Lele11g1148 11 18753950 18758529 CCT
Lele30g1142 30 14370301 14376052 Lele12g0176 12 1359929 1363476 CCT
Lele30g1142 30 14370301 14376052 Lele31g1276 31 18922675 18928400 hybridization
Lele30g1142 30 14370301 14376052 Lele32g0256 32 1588735 1594504 hybridization