Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1133 ATGGACTCATCGTACGGTTCTCTCGTGAGGCCCTGCACTCCCTTCCTTCATCGCGAAGAAGTTCTGTGCTTTGATCTTCAATACGACCAATGCCTCACCAAGCTGAATCATCTGACTCGTGAGCTCACTTGGAAGAAGGACTTCTCGACGGCGATTTTGGAGCGTAAGAAGTCGCCGAATCGACTGGTTGTAGATGAGGCCGTCAACGACGATAACTCAGTGGTGTCGATGCACCCTGAAACCATGGAAAAGCTGCAGTTTTTCCGAGGCGATACAATCCTCATCAAGGGGAAGAAGCGAAAGGATACAGTTTGCATAACTCTTGCTGACGACACATGTGAGGAACACAAGATCAGGATGAATAAAGTTGTAAGGTCAAATTTGAGGGTTCGTCTTGGGGATGTTGTATCTGTGCATCAGTGCCCTGATGTTAAGTATGGGAAACGTGTGCATATTCTACCCATCGATGATACCGTTGAAGGGGTCACTGGCAATCTGTTCGATGCTTATTTGAAACCTTACTTCTTGGAGGCTTACCGTCCTGTTAGAAAGGGGGATTTGTTTCTTGTTCGTGGAGGGATGAGAAGTGTAGAGTTCAAGGTCATTGAGACTGATCCAGGGGAGTATTGTGTGGTTGCTCCAGACACTGAAATCTTCTGTGAAGGGGAGCCTGTAAAAAGGGAGGACGAGGAAAGGTTGGATGAAGTTGGGTATGATGATGTGGGTGGTGTTAGGAAACAAATGGCACAAATTCGCGAGTTGGTAGAGCTCCCATTGAGGCATCCTCAACTTTTTAAATCAATTGGTGTGAAACCTCCCAAAGGAATTTTATTGTATGGACCCCCAGGTTCCGGGAAGACATTAGTAGCAAGGGCTGTTGCCAATGAAACCGGAGCTTTCTTCTTTTGCATCAATGGACCAGAGATTATGTCTAAATTGGCGGGAGAGAGTGAGAGCAATCTCAGGAAAGCATTTGAAGAAGCTGAAAAGAATGCGCCATCCATCATCTTTATTGATGAGATTGATTCCATTGCGCCCAAGAGAGAGAAGACACACGGTGAAGTTGAGAGGAGAATTGTTTCACAACTTTTGACTCTGATGGATGGACTAAAATCTCGGTCTCATGTTATTGTTATTGGTGCTACAAATCGTCCAAACAGCATTGATCCAGCATTGAGGAGGTTTGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAGTTGGGCGACTTGAAGTCCTTCGCATTCATACCAAAAACATGAAGCTCTCTGATGATGTTGATTTGGAGAAAATTGCAAAGGATACTCATGGATATGTTGGTGCTGACCTTGCGGCCCTTTGCACTGAAGCTGCTCTGCAATGCATTAGGGAGAAGATGGATGTCATTGACTTGGAGGATGAGACCATTGACGCTGAAGTACTGAACTCTATGGCAGTTTCAAATGAGCATTTCCAAACTGCTCTAGGAACAAGCAATCCGTCAGCTCTACGTGAAACTGTTGTTGAGGTGCCTAATGTCAGTTGGGAAGACATTGGAGGCCTTGAGAATGTCAAGCGCGAACTGCAAGAGACTGTTCAATATCCTGTGGAGCACCCAGAAAAATTTGAGAAATTTGGCATGTCACCATCAAAGGGGGTCCTCTTCTATGGTCCTCCAGGATGCGGAAAGACTTTGTTAGCCAAGGCAATTGCTAATGAATGTCAAGCAAACTTCATCAGTGTGAAAGGTCCTGAATTGCTTACAATGTGGTTTGGTGAAAGTGAAGCCAATGTTCGTGAAATTTTTGACAAGGCCAGACAATCTGCTCCATGTGTCCTCTTCTTTGATGAGCTTGACTCCATTGCTACTCAGAGAGGAAGCAGTGTTGGGGATGCTGGTGGTGCTGCTGACAGAGTTCTTAATCAACTCCTGACTGAAATGGATGGCATGTCTGCAAAGAAGACAGTGTTCATTATTGGGGCAACTAACAGACCTGATATCATTGACCCAGCACTCCTTCGGCCAGGTCGCCTGGATCAGTTGATCTATATTCCTCTTCCTGATGAGGACTCCCGTCATCAAATCTTCAAGGCCTGCTTGAGGAAGTCACCCGTCTCAAAAGATGTTGATCTGAGAGCACTAGCTAAGTATACTCAGGGTTTCAGTGGGGCTGATATTACAGAAATAGGCCAGAGAGCATGCAAATATGCTATAAGAGAAAACATCGAAAAGGATATAGAGCGAGAGAGGAGAAGAAGTGAGAACCCTGAGGCCATGGACGAAGACATTGATGAAGAAGTTGCAGAGATTAAGGCTGCTCATTTTGAAGAGTCCATGAAGTTTGCCCGTAGGAGTGTTAGTGATGCCGACATTCGTAAATATCAAGCTTTTGCTCAAACCTTACAGCAATCCAGGGGCTTTGGAAGTGAATTCAGGTTTTCAGAGACTGGAACGAGGGCTGCTGGGTCTGACCCCTTTGCCACTTCTGCTGCGGCGGCCGATGAGGATGATTTGTATAGTTAA 2511 0.4552 MDSSYGSLVRPCTPFLHREEVLCFDLQYDQCLTKLNHLTRELTWKKDFSTAILERKKSPNRLVVDEAVNDDNSVVSMHPETMEKLQFFRGDTILIKGKKRKDTVCITLADDTCEEHKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLVARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRSHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLEKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEIGQRACKYAIRENIEKDIERERRRSENPEAMDEDIDEEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFSETGTRAAGSDPFATSAAAADEDDLYS 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1133 836 SMART AAA_5 272 408 IPR003593 -
Lele30g1133 836 SMART AAA_5 545 684 IPR003593 -
Lele30g1133 836 Pfam AAA+ lid domain 428 470 IPR041569 -
Lele30g1133 836 Pfam AAA+ lid domain 704 744 IPR041569 -
Lele30g1133 836 Gene3D - 144 240 - -
Lele30g1133 836 ProSitePatterns AAA-protein family signature. 652 670 IPR003960 GO:0005524|GO:0016887
Lele30g1133 836 PANTHER AAA-FAMILY ATPASE 434 800 - -
Lele30g1133 836 SUPERFAMILY ADC-like 57 141 IPR009010 -
Lele30g1133 836 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 507 795 IPR027417 -
Lele30g1133 836 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 62 798 IPR005938 GO:0016787
Lele30g1133 836 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 497 IPR027417 -
Lele30g1133 836 CDD AAA 515 682 - -
Lele30g1133 836 SMART CDC48_N_2 61 144 IPR003338 -
Lele30g1133 836 FunFam Transitional endoplasmic reticulum ATPase 499 682 - -
Lele30g1133 836 CDD AAA 242 405 - -
Lele30g1133 836 ProSitePatterns AAA-protein family signature. 376 394 IPR003960 GO:0005524|GO:0016887
Lele30g1133 836 FunFam Transitional endoplasmic reticulum ATPase 237 405 - -
Lele30g1133 836 Pfam Cell division protein 48 (CDC48), domain 2 163 226 IPR004201 -
Lele30g1133 836 SUPERFAMILY Cdc48 domain 2-like 143 235 IPR029067 -
Lele30g1133 836 MobiDBLite consensus disorder prediction 812 836 - -
Lele30g1133 836 Gene3D - 499 682 IPR027417 -
Lele30g1133 836 Gene3D - 686 794 - -
Lele30g1133 836 Gene3D - 407 498 - -
Lele30g1133 836 FunFam Transitional endoplasmic reticulum ATPase 39 143 - -
Lele30g1133 836 Gene3D - 241 405 IPR027417 -
Lele30g1133 836 Pfam ATPase family associated with various cellular activities (AAA) 276 405 IPR003959 GO:0005524|GO:0016887
Lele30g1133 836 Pfam ATPase family associated with various cellular activities (AAA) 549 682 IPR003959 GO:0005524|GO:0016887
Lele30g1133 836 Pfam Cell division protein 48 (CDC48), N-terminal domain 61 142 IPR003338 -
Lele30g1133 836 FunFam Cell division control 48 144 240 - -
Lele30g1133 836 Gene3D - 40 143 - -
Lele30g1133 836 SMART CDC48_2_2 161 227 IPR004201 -
Lele30g1133 836 FunFam Cell division control 48 407 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1133 Lele-ChrLele30 14320454 14324418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1133 478 741 Calmodulin-binding Proteins AT3G56690 48.106 1.83e-78 272