Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1125 ATGCAGCGATCTGGTTATGGCCGTGATGGAATTTACAGGTCTCTCAGGCCCCCTCCCGTCACTCCCAGGGACGATAATCTCTCTCTCGTTTCATTTCTCTTCAGAAATGTCGCCTCTTTTCCCACCAAACCTGCCTTGTTTGACGCCGATTCCTCCCAAACTCTATCCTTCGCTCAGTTAAAGTCCTTAGTAGTGAAAGTCTCCCATGGCCTTCTACATCTGGGCATCAAGAAAAACGACGTCGTCCTCTTCTTTGCGCCCAACACCATCCTCTACCCTGTCTGCTTCCTCGGCGTCACCGCCATTGGCGCCATCGCCTCCACCGCCAACCCTATCTACACGGTCGCGGAGGTTTCCAAGCAAGTGAAAGATTCCAATCCCAAGCTCCTGATTTCCGTTCCTGAGCTGTGGGACAAAGTGAAGGGTTTCAATCTCCCCTCGGTGATTTTGGGTTCCCAAACCCCTTCACTTGTCACGTCGAATTCGAAAATTACGACCTTTGATGGGTTGCTTGAGTTGGCCGGGTCTCCCATGGAATTTCCGGCAAGTAATGTCAAACAGAGCGATACGGCGGCGCTTTTGTATTCCTCGGGTACTACGGGGGTCAGTAAGGGAGTGATTCTCACGCATAAGAGTTTCATAGCCGCTTCTCTTATGATGGGCATGGATGATGAGTTGGCTAACGAGAGACACGATGTCTTTCTTTGCGTTCTCCCGATGTTTCATATTTTCGGGCTCGCAGTCATTACATACTCGCAGCTTCAGAGAGGCAATGCGGTCGTGTCTATGAAGAAATTTGACTTCGAAATGATGTTAAAGGCAGTTGAAAAGTATAGCGTGACTCGTTTGTGGGTTGTGCCTCCAATTATCCTTGCTCTGGCGAAACAGAACGTCGTGAAGAAGTATAATCTTTCATCATTGAAGCAAATTGGATCTGGAGCTGCTCCTCTGGGGAAAGAATTGATGGAAGATTGTGCTAAAAATTTCCCTCAAGCTTTGGTTTTACAGGGCTATGGTATGACAGAAACTTGCGGCATTGTATCTGTGGAGAATCCAAGAATGGGTATTCGTCATAGTGGTTCAGCAGGAATGCTTGTTTCAGGAGTTGAGGCTCAAATAATCAGTGTGGATACGCTGAAGCCCCTCCCTCCTCGTCAGTTGGGTGAGATATGGGTACGGGGCCCTAATATGATGCAAGGTTATTACAACAATCCACAGGCCACAAGATCAACTATAGATAAAATGGGATGGGTGCATACGGGAGATCTTGGATATTTTGATGAGGAAGGGCAACTTTATGTTGTTGACCGTATCAAAGAACTCATCAAGTATAAAGGTTTTCAGGTTGCACCAGCAGAACTCGAAGGGCTTCTTGTTTCTCATCCTGAGATAATGGATGCTGTTGTCATCCCATATCCCGATGCTGAGGCTGGTGAGGTCCCAGTTGCCTATGTTGTTCGTTCGCCCAATAGTTCACTGACTGAAGAAGACGTTCAGAAGTTTATAGCTGATCAGGTTGCGCCTTTCAAAAGATTGCGAAGAGTGACATTCATCAACGCTGTTCCTAAGACAGTTTCTGGAAAAATTCTCAGAAGATTGCTTATTGAGAAAGCACGATCCAAAATATGA 1629 0.469 MQRSGYGRDGIYRSLRPPPVTPRDDNLSLVSFLFRNVASFPTKPALFDADSSQTLSFAQLKSLVVKVSHGLLHLGIKKNDVVLFFAPNTILYPVCFLGVTAIGAIASTANPIYTVAEVSKQVKDSNPKLLISVPELWDKVKGFNLPSVILGSQTPSLVTSNSKITTFDGLLELAGSPMEFPASNVKQSDTAALLYSSGTTGVSKGVILTHKSFIAASLMMGMDDELANERHDVFLCVLPMFHIFGLAVITYSQLQRGNAVVSMKKFDFEMMLKAVEKYSVTRLWVVPPIILALAKQNVVKKYNLSSLKQIGSGAAPLGKELMEDCAKNFPQALVLQGYGMTETCGIVSVENPRMGIRHSGSAGMLVSGVEAQIISVDTLKPLPPRQLGEIWVRGPNMMQGYYNNPQATRSTIDKMGWVHTGDLGYFDEEGQLYVVDRIKELIKYKGFQVAPAELEGLLVSHPEIMDAVVIPYPDAEAGEVPVAYVVRSPNSSLTEEDVQKFIADQVAPFKRLRRVTFINAVPKTVSGKILRRLLIEKARSKI 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1125 542 Gene3D - 440 541 IPR045851 -
Lele30g1125 542 Gene3D - 11 439 IPR042099 -
Lele30g1125 542 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Lele30g1125 542 ProSitePatterns Putative AMP-binding domain signature. 193 204 IPR020845 -
Lele30g1125 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 537 - -
Lele30g1125 542 Pfam AMP-binding enzyme 34 444 IPR000873 -
Lele30g1125 542 CDD 4CL 22 534 - -
Lele30g1125 542 SUPERFAMILY Acetyl-CoA synthetase-like 22 540 - -
Lele30g1125 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 16 439 - -
Lele30g1125 542 FunFam 4-coumarate--CoA ligase 2 440 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1125 Lele-ChrLele30 14275289 14278866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1125 1 542 Monolignol Biosynthesis Gene Families AT4G05160 69.485 0.0 803
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1139 11 18687622 18688546 Lele30g1125 30 14275289 14278866 CCT
Lele12g0183 12 1420046 1422254 Lele30g1125 30 14275289 14278866 CCT
Lele30g1125 30 14275289 14278866 Lele31g1262 31 18828070 18831552 hybridization
Lele30g1125 30 14275289 14278866 Lele32g0268 32 1666924 1671445 hybridization