Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1112 ATGGTCCTGCAGGAGTATTGGGGGGCCCAATGGTCCAATCTACGGAAACAGGGTAGATTGCGTCCATTAGGATTATTGATTTGGTATCTCGGCATCCTCTTTAACTCATGGACGTCCCTTTCTCTCCGCCCGTCTTTCCCTCTCTCCTTCACATATAAATTATCTTCATTCCTTCCCTTTCTCTCTCCCTTATCCATCAAATCATCATCGACCATGGAATCCCACTTGCTCCTTCCTTCCTTCCCCCAATCCTCTGAATCCTCTGCTCACCATTTCGGATGCAAGCACTACAGAAGGGGCTGCAAGATCAGAGCACCCTGTTGCGATGAAATTTTTTACTGTCGCCATTGCCATAATGAAGCTAAGAGCTCCGAATGCCTCAATTCCGTCGATCGTCACGATGTACCCCGCCACGACATTATAAAGGTCATCTGTTCCTCATGTGAAAAAGAACAAGATGTTCAACAGTATTGCATCAACTGTGGAATCTGCATGGGGAAGTACTTTTGTGCTACTTGCAAATTCTTCGACGATGATATTTCGAAGAACCAATACCACTGTGATGAATGTGGCATCTGCAGAACTGGAGGCAAGGATAACTTTTTCCACTGTAAGAGATGTGGTTGTTGCTACTCCAATGTGATGAAAGAAGGACACCGATGTGTCGAACGAGCAATGCATCACAATTGCCCTGTTTGTATTGAGTATCTATTTGATACCTTAAGAGACATCACGGTCTTGCCTTGCGGCCATACCATACATTTGGAGTGTGTTAGAGAGATGGAGAAACATGTCAGGTATTCATGCCCAGTTTGTTCAAAATCCATATGTGACATGTCAAATCTGTGGAAGAAGCTTGACCAAGTGATCGCTTCGACCCCAATGCCTGAAGCTTACAAGGAAAAGATGGTGTGGATACTGTGCAATGATTGTGGAGCGAACTCTCAAGTGCAGTTCCACGTGGTAGCTCATAAGTGTCAGAGTTGCAACTCATACAACACAAGACGGATACAGGGAAGCCCCACCGCTGCATGCAGTTCTTGGGTGGCTGAGATGGTTAGATGA 1065 0.4563 MVLQEYWGAQWSNLRKQGRLRPLGLLIWYLGILFNSWTSLSLRPSFPLSFTYKLSSFLPFLSPLSIKSSSTMESHLLLPSFPQSSESSAHHFGCKHYRRGCKIRAPCCDEIFYCRHCHNEAKSSECLNSVDRHDVPRHDIIKVICSSCEKEQDVQQYCINCGICMGKYFCATCKFFDDDISKNQYHCDECGICRTGGKDNFFHCKRCGCCYSNVMKEGHRCVERAMHHNCPVCIEYLFDTLRDITVLPCGHTIHLECVREMEKHVRYSCPVCSKSICDMSNLWKKLDQVIASTPMPEAYKEKMVWILCNDCGANSQVQFHVVAHKCQSCNSYNTRRIQGSPTAACSSWVAEMVR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1112 354 Pfam Ring finger domain 229 272 IPR001841 -
Lele30g1112 354 Pfam Zinc-ribbon 277 335 IPR039512 -
Lele30g1112 354 ProSiteProfiles Zinc finger RING-type profile. 230 273 IPR001841 -
Lele30g1112 354 ProSiteProfiles Zinc finger CHY-type profile. 87 163 IPR008913 GO:0008270
Lele30g1112 354 SUPERFAMILY CHY zinc finger-like 90 164 IPR037274 GO:0008270
Lele30g1112 354 SMART ring_2 230 272 IPR001841 -
Lele30g1112 354 SUPERFAMILY RING/U-box 229 278 - -
Lele30g1112 354 Gene3D - 303 343 - -
Lele30g1112 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 302 IPR013083 -
Lele30g1112 354 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 87 339 - -
Lele30g1112 354 FunFam RING finger and CHY zinc finger domain-containing protein 1 301 344 - -
Lele30g1112 354 SUPERFAMILY Zinc hairpin stack 166 223 IPR037275 -
Lele30g1112 354 Pfam CHY zinc finger 94 175 IPR008913 GO:0008270
Lele30g1112 354 ProSiteProfiles Zinc finger CTCHY-type profile. 165 229 IPR017921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1112 Lele-ChrLele30 14180971 14183470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1112 38 338 C2H2 Transcription Factor Family AT3G18290 35.714 5.10e-56 195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1112 30 14180971 14183470 Lele31g1246 31 18726877 18729243 hybridization
Lele30g1112 30 14180971 14183470 Lele32g0282 32 1763347 1766004 hybridization