Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1110 ATGGACATGGATGCCGCAGACCAGCTTGTGGGGTCATCCGCCGCCTCTCTTAACGTCGCCAAAGGCAAACGCACCAAACGCCACAGGCCCATCTCCGCCTCTCTCACTCACTCCACCTCCTCCTCTTCTTCTGCCGATGATTACGCCTCCTTTAATTCCTCCGCCTCCACCACTCTTGACGGCGCCGAGGATGAGGAAGAAGACATGGCTAATTGCTTGATTCTCTTGGCCCAGAGTGGGGATGCTCCGCATAAGGAGCCTCCCACCACCAAGAATATTAGTGGCTTCTATGTTTACGAGTGCAAAACTTGTAACAAATCGTTCCCTTCCTTTCAAGCGTTGGGCGGACACAGAGCAAGCCACAAGAAACCTAAGGTTGAGCCCCCACAACCACTCGAAGCCTCCGCCTCCGCCGCACAAGTTGCGAGTTTTGAGTTTGAAGGAGCAGGGGAAGATCGGTTCAAGAGCACCTCTCAGATTTCCCTTCAATTAGCGAGCAACAAGGCATTCCATGGCAACAAGGCAAAGATCCACGAGTGTTCGATATGTGGGTCGGAGTTTACGTCCGGGCAAGCATTGGGTGGCCACATGAGGAGGCACAGAGCATCGGCCAACGCGGCCGCCGTGGAAGTGAAGCCCAGGAATGTTCTCGAATTGGATCTTAATTTGCCGGCGCCGGAGGACGATCTCCGGGAGTCCAAGTTTCAGTTCACAGCCGCGCCGAAATCCCTGGTGCTGTCTGCTGCGGCTCTGGTGGACTGCCATTATTGA 771 0.5499 MDMDAADQLVGSSAASLNVAKGKRTKRHRPISASLTHSTSSSSSADDYASFNSSASTTLDGAEDEEEDMANCLILLAQSGDAPHKEPPTTKNISGFYVYECKTCNKSFPSFQALGGHRASHKKPKVEPPQPLEASASAAQVASFEFEGAGEDRFKSTSQISLQLASNKAFHGNKAKIHECSICGSEFTSGQALGGHMRRHRASANAAAVEVKPRNVLELDLNLPAPEDDLRESKFQFTAAPKSLVLSAAALVDCHY 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1110 256 PANTHER ZINC FINGER PROTEIN ZAT5 38 239 - -
Lele30g1110 256 Pfam C2H2-type zinc finger 98 124 - -
Lele30g1110 256 Pfam C2H2-type zinc finger 178 202 - -
Lele30g1110 256 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Lele30g1110 256 Gene3D Classic Zinc Finger 96 200 - -
Lele30g1110 256 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Lele30g1110 256 SUPERFAMILY beta-beta-alpha zinc fingers 98 200 IPR036236 -
Lele30g1110 256 ProSitePatterns Zinc finger C2H2 type domain signature. 180 200 IPR013087 -
Lele30g1110 256 SMART c2h2final6 178 200 IPR013087 -
Lele30g1110 256 SMART c2h2final6 99 121 IPR013087 -
Lele30g1110 256 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 205 IPR013087 -
Lele30g1110 256 MobiDBLite consensus disorder prediction 1 64 - -
Lele30g1110 256 MobiDBLite consensus disorder prediction 32 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1110 Lele-ChrLele30 14167077 14167847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1110 19 256 C2H2 Transcription Factor Family AT2G28200 43.051 4.28e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele30g1110 zf-C2H2_6 1.6e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1125 09 20400650 20408186 Lele30g1110 30 14167077 14167847 CCT
Lele10g1094 10 22351578 22355246 Lele30g1110 30 14167077 14167847 CCT
Lele30g1110 30 14167077 14167847 Lele31g1244 31 18716667 18717440 hybridization