Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1108 ATGGCGAACGGTAAGGATTCCGACGAATTCCGGGTGTTATCGAGGGTCCGGACTGGGCTGAAGAGGGAGTTTGCATTCGCCATGAAGGCTCAATCCGAGATCTGTGGATCCCTTGGACGGACCCGTGCCAGCAAAAACAAGAATGGGGTTCAAGATAGTCCCAGCAACAAGAGGTCCAAGAAATCTGGTTCGTCTAGGGATAAGAAAGATGGACATAATAGTGCGAAGCCGTTGCCGGATGATGTTATCGAACCCATTGTTTTGGAAGAGGGCAAGGGAAAGGAGGTAAAGGCTACAGAAGATATCGATGATGTTATGAGCGAGGAGGAGGCAAAAAGCGATGTGGTGGATCTATCGGGTGACGACGAACCCAAGAACTTAGTGAGTGAGTCGATGGGCAAGAGGGACCCCATGGATGAGGCTTCAGTGCCCATTTGTGATGAGGAGCCCAAGGGCGATGATGTAGAAACTGTAAGCGACAATGAGCCGAAAAGTATTCCAATGTCAGAATCACAGCAGGAAGCAACAATGGATGATATAGCGCCAGCCACTTGCCAACCCGAGTCCAAGGAACATCAAACAAATGAAGACGATTTACAGAAGTCTTTAACGACTGAGAACTTGAGCGGGGGAGAGACATGTTCTCCAGAGGAAAAGGGTTTTATTGTGACTACCCCTCTTTCGCTTAATGATGACAATAAGGTGAAGACAATGATAGGGGGGCCACCGAGGCGGTTTACGCGGTCGGCTCTGAAACAACAGCAAGATGATTCGAAGCTCTCAAATGATGGGAAAGAAGCTTGTGATAGAGCCATTGGATTTGTTGATGTTAAGAGGGAAAGTGAGGATGCTTCATTGATCGCTACGCCAACTCAAACAAAAATGTCGAAGAATAGTGCCTCGAAAAAGTTCCCTACTAAGCTAAAGGACCTTCTAGCCACGGGGATTCTTGAAGGACTACCTGTCAATTATGTTCGGGGAGGGAAGGCACGAAGGGCTGGAGAATCAGGGCTCCGAGGAGAGATTAGGCGCTCAGGGATTTTGTGCTATTGCGAAGTTTGTAACGGGGTTGAGGTTGTATCACCCACCGTGTTTGAGCTGCATGCTGGTAGTTCAAACAAGCGCCCCCCAGAGTACATATACCTGGAGAATGGGAATACGCTCCGTGATGTCATGAATACATGTTCGAGCATTGCAATAGATGCTTTGGAGGAAGCAGTACAGAAAATTCTTGGGGACTTCACCTTTAAGAAATCTGCAATCTGTTTGAATTGCAGAGTGGCCATATCTAAAGCTGGCAAGGGATGGTCAAGACTACTCTGCGATACTTGCGCGGTTTTAGAAGAGTTTCAACCTACCCCTATTCAAATAGCTGAGGCTAGCAATTCCTGTTCGTCTCCTGCAGTTACTCTCAGGTCTCCAGAACCAGTTGTTGTTCCATCGACATTAAACAGTGGGATGAAGCACACAGCTTCTCGTGGCAAGAGTCAAGGAAGAATAACTAAAAAGGATCTGCGGTTGCATAAATTGGTCTTTGAGGAAGATGTGTTGCCAGATGGAACTGAAGTTGCCTACTATGCTCGCGGACAGAAACTTTTGGTGGGTTACAAAAAAGGGTTTGGAATTGTTTGTAGCTGCTGTGACTCTGAGGTAAGCCCCTCACAATTTGAAGCTCATGCTGGTTGGGCATCGCGACGCAAGCCTTATCTGCACATATACACATCCAACGGCGTCTCTCTCCATGAACTGTCCATTTCTCTGTCAAAAGATCGGAGGTTTTCTACCAATGAAAATGATGATCTCTGCAGCATCTGCTCGGATGGAGGGAGTCTTTTGTGTTGTGATGGATGCCCAAGGGCTTTTCACATAGACTGTGTTCCTCTGCCAAGCATTCCAACTGGCACTTGGTATTGTAAATATTGCCAAAACCTGTTCCAGAAAGACAAATATGTGGGGCATAACATGAATGCATTGGCAGCAGGAAGGATTGCAGGGGTTGATCCTTTAGAACAGATAAACAAACGATGCATTCGTATTGTCAAGACTGTAGAGGTTGACCAAGGTGGATGTGCATTATGCAGAAGCCATGATTTCAGCAAAAGCTTTGGGCCTCGAACAGTGATTATTTGTGATCAGTGTGAAAGGGAATATCACGTAGGCTGTTTGAAGGAGCATAACATGCAGAACTTAGAGGAATTGCCTGAAGGAAATTGGTTCTGCTGCACTGATTGCTGTCAGATTCATTCTGCTCTGCTTAATTTGGTCACCTGTGGGGCGGAGAATCTTCCGGATTCTCTATTAAGTATGATACGAAAGAAGCATGAAGAAAAGGGTGTGGAAAATGGGGCTGGTCTAGATATAAAATGGAGAATCTTAAATTGGAAACTTGCTGCTTCTGATGAAACTAGGCAACTGCTTTCGAAGGCCGTTGCAATCTTCCATGAGCGGTTTGATCCAATAGTTGATTCAACTTCAGGCCGTGATTTCATTCCAACAATGCTTTATGGAAGGAACATCAGGGGTCAAGATTTTGGTGGGATGTATTGTGCGGTGCTAACAGTGAATCAAGTGGTTGTTTCTGCAGGCATATTTCGTATATTTGGGGCAGAAGTGGCAGAGCTTCCCTTGGTGGCAACCATTGCAGATTGCCAAGGACAGGGTTACTTCCAGTCCTTGTTTTCTTGCATAGAAAGGCTGCTTGGATCTTTAAATGTGAAACAATTCGTCCTACCGGCTGCTGAAGAGGCGGAATCAATATGGACGAGTAAATTTGGCTTTACAAAGTTAGAACAAGATGAGGTAAACAATTACAAGAGATATTATCACATGATGATATTTCAAGGGACCCCAGTGCTGAGGAAGCCAGTTCCTGCACCACCCGAATTGTGCGTCAATGCGGTGTAA 2904 0.4594 MANGKDSDEFRVLSRVRTGLKREFAFAMKAQSEICGSLGRTRASKNKNGVQDSPSNKRSKKSGSSRDKKDGHNSAKPLPDDVIEPIVLEEGKGKEVKATEDIDDVMSEEEAKSDVVDLSGDDEPKNLVSESMGKRDPMDEASVPICDEEPKGDDVETVSDNEPKSIPMSESQQEATMDDIAPATCQPESKEHQTNEDDLQKSLTTENLSGGETCSPEEKGFIVTTPLSLNDDNKVKTMIGGPPRRFTRSALKQQQDDSKLSNDGKEACDRAIGFVDVKRESEDASLIATPTQTKMSKNSASKKFPTKLKDLLATGILEGLPVNYVRGGKARRAGESGLRGEIRRSGILCYCEVCNGVEVVSPTVFELHAGSSNKRPPEYIYLENGNTLRDVMNTCSSIAIDALEEAVQKILGDFTFKKSAICLNCRVAISKAGKGWSRLLCDTCAVLEEFQPTPIQIAEASNSCSSPAVTLRSPEPVVVPSTLNSGMKHTASRGKSQGRITKKDLRLHKLVFEEDVLPDGTEVAYYARGQKLLVGYKKGFGIVCSCCDSEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHELSISLSKDRRFSTNENDDLCSICSDGGSLLCCDGCPRAFHIDCVPLPSIPTGTWYCKYCQNLFQKDKYVGHNMNALAAGRIAGVDPLEQINKRCIRIVKTVEVDQGGCALCRSHDFSKSFGPRTVIICDQCEREYHVGCLKEHNMQNLEELPEGNWFCCTDCCQIHSALLNLVTCGAENLPDSLLSMIRKKHEEKGVENGAGLDIKWRILNWKLAASDETRQLLSKAVAIFHERFDPIVDSTSGRDFIPTMLYGRNIRGQDFGGMYCAVLTVNQVVVSAGIFRIFGAEVAELPLVATIADCQGQGYFQSLFSCIERLLGSLNVKQFVLPAAEEAESIWTSKFGFTKLEQDEVNNYKRYYHMMIFQGTPVLRKPVPAPPELCVNAV 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1108 967 MobiDBLite consensus disorder prediction 162 179 - -
Lele30g1108 967 MobiDBLite consensus disorder prediction 109 160 - -
Lele30g1108 967 Gene3D - 786 952 - -
Lele30g1108 967 ProSiteProfiles Zinc finger PHD-type profile. 599 644 IPR019787 -
Lele30g1108 967 ProSitePatterns Zinc finger PHD-type signature. 602 641 IPR019786 -
Lele30g1108 967 MobiDBLite consensus disorder prediction 59 101 - -
Lele30g1108 967 PANTHER AUTOIMMUNE REGULATOR 121 956 - -
Lele30g1108 967 MobiDBLite consensus disorder prediction 37 58 - -
Lele30g1108 967 CDD PHD1_AIRE 601 641 - -
Lele30g1108 967 SMART PHD_3 601 642 IPR001965 -
Lele30g1108 967 SMART PHD_3 689 745 IPR001965 -
Lele30g1108 967 Pfam Tify domain binding domain 340 395 IPR032308 -
Lele30g1108 967 Pfam Tify domain binding domain 535 583 IPR032308 -
Lele30g1108 967 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 588 665 - -
Lele30g1108 967 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 796 957 IPR000182 GO:0016747
Lele30g1108 967 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 588 664 IPR013083 -
Lele30g1108 967 SUPERFAMILY FYVE/PHD zinc finger 588 644 IPR011011 -
Lele30g1108 967 Pfam PHD-finger 602 643 IPR019787 -
Lele30g1108 967 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 684 747 IPR013083 -
Lele30g1108 967 MobiDBLite consensus disorder prediction 36 198 - -
Lele30g1108 967 FunFam PHD finger family protein 786 955 - -
Lele30g1108 967 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 845 946 IPR016181 -
Lele30g1108 967 SUPERFAMILY FYVE/PHD zinc finger 681 747 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1108 Lele-ChrLele30 14152426 14157771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1108 305 956 PHD Transcription Factor Family AT2G36720 46.583 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele30g1108 TDBD 3.6e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1118 11 18448483 18459413 Lele30g1108 30 14152426 14157771 CCT
Lele12g0203 12 1613262 1616271 Lele30g1108 30 14152426 14157771 CCT
Lele09g1120 09 20352725 20355782 Lele30g1108 30 14152426 14157771 CCT
Lele10g1089 10 22301028 22304054 Lele30g1108 30 14152426 14157771 CCT
Lele30g1108 30 14152426 14157771 Lele31g1242 31 18704363 18709593 hybridization
Lele30g1108 30 14152426 14157771 Lele32g0286 32 1783007 1788353 hybridization