Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1105 ATGACGTGTCCGCATTTATTATTTGGAAATTGCCGCTTTCCTACTTTCCCTCTCTCGCATTGTTCCCTTCTTCCTTCCTTGTTCATCTTCCTTCGCTCCCTGTCTCTCTCTCTCTCTCTACCCCCCAAGTACTTCACACTTCCCATCTTAGTTTTCGGTTCCTTTACTTCTAAACATAAGACCACAACTTTACCATTTAAGAACTCTATCTACCTGAATGCAGTAAGCCGGATGGCTGCTTTCTGCTCAGTTTCCCTGAGTTTCTTCAATCTGAGATTCAATGTGTTGGCACACTTTCAAACAGAGGACTCTCATTCTCAATCATCGAATAGGCGTGGAGATGGAGGCAGGGGAAGCACCAAGTCATCTTCACTTTCTCAACTATGGCAAGAGATTGAGGATGAACATATTCAAGGATCTCATCATGATAAGCCAGAGGAGTTAAACAATTCTGGTTGTGAAAACTCTTCTGATCTCGGAGATCTTGAGAGGGAAAGAGTAAGGAAAATTTTCAGAGAATGGATGAATAGTGGCGCTAGAGATGAAGAATCCAGCATTTCCATCAGAAATAACAGTCCCAGGGACGAGTGGCTTGGTGAAATAGAGCAAGAGAGGGTGAGAATTATAAGGGAGTGGGTTCAAATGAGTAGCCAGCAGCAGAACGGTGTTTCTTCTGAGGAAAGTAGAGAGGAGCAATCTGCAGAAATTGAACGTGTTCGTAATGGATTTGTTATGAATAAAAATGAAGGGCAGAGTGAGCAAACTCGTAGAGGGATTCGAAAATTATGTGGCAGACAAGTTTTGCTTGATATGCTAAACAAGGCCGAGAGAGAAAGGCAGAGAGAAGTTCAGGAATTGTTGGACCATCGAGCTGTATCTCATTTTCCCCATCGCAATCGCATTCAGGCATTGCTCAGAGGCAGGTTTCTGAGAAATGACAGAGTTGCTGATAAGAAAAGAACCACTTCTGTGTCCGACAGTGAATTAGGCTTATTGAGGCAAAAGCAGACTGTTTCAGGTTTAAGGGAAGGATTCTTCTCTAGAAAGAACATTTCTGGTTGCAGTTTAGCAAGCAACAATTTACCTGATACCTCATCAAACAGTGATATTGATGAAGCCAGCAGTTCAGAGAGTTCCCCAAATGTACATTCCAGACAATCTGAGCCCAATTATCCAGGAACTGATGCAACTCAAATATCTGGTGCTCAGATTTGTCTGCAGAGACCTGCACTTGAGAAATTAGAATGGCAGCAAGACTCTCCTGCTCATGTTGAAGCAGAGGAACCACAGGATTCGAAAATTGAATCAAGAGATTTACTAAAGTCATCAATCAATATTGGTATCGAAACAAGAGATGAATCCCCACAAAGTGTTTATGTGGCGTCAACAGAAGATTCGTCTACGGAACTTTCCCAACCAGGTTTGCCAAGTGAATATACAGAGCATTGCTCTATGCAGGTGTTCAGTGAGGACCATAACGAACAGTCTGATCATGGATATTATTCAGAGGGAAATATCATTGATGACGATAACTTGAATGAGCCTGTTGCCCTAGAAAGAGAGCTGTCCATAGAGTTTAGAAATGATGAAAGTGAAAGTCTTCTGCTTGATGCTGAACAGGGAGACAGCCCTGAGGAAAGTATGGATCTTAATCGTCCAACTTCTACAGCAAACGAGAGGCCCCAACACATGTTGGAGAACGAAGATGGCGAAGACCCTCATGTTCAAGAAGCATCTGAATTGCGGCCACAAGATGATGACGCTCAAGAACGGATTGAAAATTTTTCTGATCATGAAGGTGCTGCTACAGTTGGCGCAACTCATGTAATGTATTTTTCTGATGATGACAATGCGCATAGTGGAGAACTCGGTGAACTGTTAAATAGGAGACGAGTTTCAAATCTCCTTAGCAGCAGTTTCCGAGAGAATCTGGATCAGTTGGTACGATCGTACGTTGAAAGGCAGAATGAAGCTCAAATGGAGTGGGAGCTGCAAGAGGAAGAAGACTACCTGGAGCAGCATGCTATGGATCACCAGATTGGTGCTCAAGATGGTCCTTCTAACAGTCCCGTTTACTTGCCCTCATCACCAACTCAATCTTCCCGACCTTTTTGGGACCAACAATCACATGACGATAATTGGCCACAGAATGACACGAATAATCAACATACTGGAGTTGAGTGGGAGATTATAAATGGTTTGAGGATTGACATGGCTGTGCTACAGCGGAGGATGAATGAAATGCAGAGAATGCTAGAGGCCTGCATGGATATGCAGCTTGAGCTGCAGCGCTCATTGAAAAAAGAAGTTTCTGCTGCACTTCTTAATTGCTCGCATGATGGCTCAACGAGATTGCAAGATGATAATGATAACTCTAAGTGGGAGTGTGCGAGGAAAGGACTCTGCTGTATATGCTGTGAAAGCAATATTGATTCTCTATTGTACAGATGTGGGCATATGTGTATGTGTTCAAAATGTGCGAATGAATTGTTGCAGAGCAAGAGGAAGTGCCCAATGTGTCAAGCACCTGTGGTGGAGGTTATACATGCTTATTCCATACTATAA 2565 0.4316 MTCPHLLFGNCRFPTFPLSHCSLLPSLFIFLRSLSLSLSLPPKYFTLPILVFGSFTSKHKTTTLPFKNSIYLNAVSRMAAFCSVSLSFFNLRFNVLAHFQTEDSHSQSSNRRGDGGRGSTKSSSLSQLWQEIEDEHIQGSHHDKPEELNNSGCENSSDLGDLERERVRKIFREWMNSGARDEESSISIRNNSPRDEWLGEIEQERVRIIREWVQMSSQQQNGVSSEESREEQSAEIERVRNGFVMNKNEGQSEQTRRGIRKLCGRQVLLDMLNKAERERQREVQELLDHRAVSHFPHRNRIQALLRGRFLRNDRVADKKRTTSVSDSELGLLRQKQTVSGLREGFFSRKNISGCSLASNNLPDTSSNSDIDEASSSESSPNVHSRQSEPNYPGTDATQISGAQICLQRPALEKLEWQQDSPAHVEAEEPQDSKIESRDLLKSSINIGIETRDESPQSVYVASTEDSSTELSQPGLPSEYTEHCSMQVFSEDHNEQSDHGYYSEGNIIDDDNLNEPVALERELSIEFRNDESESLLLDAEQGDSPEESMDLNRPTSTANERPQHMLENEDGEDPHVQEASELRPQDDDAQERIENFSDHEGAATVGATHVMYFSDDDNAHSGELGELLNRRRVSNLLSSSFRENLDQLVRSYVERQNEAQMEWELQEEEDYLEQHAMDHQIGAQDGPSNSPVYLPSSPTQSSRPFWDQQSHDDNWPQNDTNNQHTGVEWEIINGLRIDMAVLQRRMNEMQRMLEACMDMQLELQRSLKKEVSAALLNCSHDGSTRLQDDNDNSKWECARKGLCCICCESNIDSLLYRCGHMCMCSKCANELLQSKRKCPMCQAPVVEVIHAYSIL 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1105 854 MobiDBLite consensus disorder prediction 547 561 - -
Lele30g1105 854 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 101 854 - -
Lele30g1105 854 MobiDBLite consensus disorder prediction 538 588 - -
Lele30g1105 854 MobiDBLite consensus disorder prediction 137 159 - -
Lele30g1105 854 MobiDBLite consensus disorder prediction 562 588 - -
Lele30g1105 854 MobiDBLite consensus disorder prediction 680 718 - -
Lele30g1105 854 Coils Coil 265 292 - -
Lele30g1105 854 MobiDBLite consensus disorder prediction 104 125 - -
Lele30g1105 854 MobiDBLite consensus disorder prediction 356 397 - -
Lele30g1105 854 Pfam Zinc finger, C3HC4 type (RING finger) 799 846 - -
Lele30g1105 854 MobiDBLite consensus disorder prediction 111 125 - -
Lele30g1105 854 Coils Coil 731 758 - -
Lele30g1105 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 785 852 IPR013083 -
Lele30g1105 854 MobiDBLite consensus disorder prediction 682 718 - -
Lele30g1105 854 CDD mRING-HC-C3HC5_NEU1 802 840 - -
Lele30g1105 854 SUPERFAMILY RING/U-box 801 847 - -
Lele30g1105 854 MobiDBLite consensus disorder prediction 452 476 - -
Lele30g1105 854 ProSiteProfiles Zinc finger RING-type profile. 802 841 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1105 Lele-ChrLele30 14134544 14138537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1105 763 848 C3H Transcription Factor Family AT3G06140 30.275 9.18e-08 53.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0204 12 1639357 1642151 Lele30g1105 30 14134544 14138537 CCT
Lele10g1088 10 22279144 22281926 Lele30g1105 30 14134544 14138537 CCT
Lele30g1105 30 14134544 14138537 Lele31g1239 31 18681471 18684640 hybridization
Lele30g1105 30 14134544 14138537 Lele32g0288 32 1803167 1806308 hybridization