Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1104 ATGGAACTCTACAACCGGAGACTGCTCCTACTGAACGAAGAAGAGCCTTCCTCCTCCGACGACACCTCTTCACCACCGCGGTTAACAGCCGCACCACTGTCGTCTTCACTGTTCGTAACACCTTTGAAACTATCAGCACCCGTACCCTTCAATTCTGACGTTGCTTACATCCTCATCATCATCCTGCTCTTAATAGCTTTCCTAGTTATGTTCATCCGAAGGTTCGCCGACCACTCCCCCGCATCCGCCGGTCAATCGCCACCGGCGTCTTCTAATTATCATTCTCCGTCATCCTCGTGCGATGGTCTCGACCAAACCATCGTCCAATCCCTGCCGGTGTTTCGGTACAACGCGGAAGCAAAGCAGCCGGAGGACTGCGCCATTTGCCTCAGCGAATTCGAGATCGGTGAGACCGTTAAGATGGTTCCGAACTGTAAGCACATGTTCCACCGGGAGTGCATCGACACGTGGCTATCCTCGCACGTGACGTGCCCGATTTGCCGTGGCAGCAAATTTTTTGCGGTGGAACGGCAGGCAGAGTCGGCTAAGGTGATGGAGCCAACCAGCGATGATCAGATTGTTAGACGTCAACCGGTAGCATCAACGGTCGAGAATGACACCTCGTGGCCAGAAGGTAGAACGATGGAGACATTCATGTAA 660 0.5333 MELYNRRLLLLNEEEPSSSDDTSSPPRLTAAPLSSSLFVTPLKLSAPVPFNSDVAYILIIILLLIAFLVMFIRRFADHSPASAGQSPPASSNYHSPSSSCDGLDQTIVQSLPVFRYNAEAKQPEDCAICLSEFEIGETVKMVPNCKHMFHRECIDTWLSSHVTCPICRGSKFFAVERQAESAKVMEPTSDDQIVRRQPVASTVENDTSWPEGRTMETFM 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1104 219 CDD RING-H2_PA-TM-RING 125 168 - -
Lele30g1104 219 SMART ring_2 126 167 IPR001841 -
Lele30g1104 219 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Lele30g1104 219 FunFam E3 ubiquitin-protein ligase ATL6 92 172 - -
Lele30g1104 219 Pfam Ring finger domain 125 168 IPR001841 -
Lele30g1104 219 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 32 169 - -
Lele30g1104 219 MobiDBLite consensus disorder prediction 200 219 - -
Lele30g1104 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 171 IPR013083 -
Lele30g1104 219 SUPERFAMILY RING/U-box 108 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1104 Lele-ChrLele30 14133565 14134224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1104 56 174 C3H Transcription Factor Family AT2G27940 45.522 4.87e-33 117