Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1095 ATGGCGGCGACTTTTCCCATCGGGATTCTCACGGCCACTATTATTGCATTATTTTTATATCGGACGACGAAGGTAACATGTGAATTTCCGATGACTCTGGCTCTTGAAAGAGCAATTCCGTTGAATAATGAAATGAAATTGAGTGATCTCAGAGCTTTGGACAATGCCAGACATCGAAGATTGATTCAATTTTCCAATGATACTACCGGTTTCTCTCTCGAGGGCACCTATGATCCTTACGTCGCCGGGCTTTATTATACAAAGGTGCAATTGGGTTCTCCTCCAAGAGATTTTCATTTGCAAGTAGACACAGGCAGCGACCCTCTCTGGGTTACCTGCAGCTCCTGTTCTGGCTGCCCCGACAGCACCGAACTTGAGATCCAGCTCAGTTCTTTCGATCCCGGGAAATCATCCACATACTCACCGGTAACTTGTTCAGAAGCAATGTGTAACAGCGAATATCAGTCCCCAGAAGCCGTGTGTTCCAGAGATAATCGCTGCACTTACACATTCCAGTACGCTGACGACAGTGCCTCTGCCGGTTACTACGTCGCCGACCTCATTCATTTTTCCACCCCCATTTCCAACGGTTCTTCACCTGTCATCTTCGGATGTAGCACGGAGTTGAGGGGAAACTTGGGGAAGAATGAAAGAGGGGTGGATGGGATAATAGGGTTTGGACAAGGGGAAACATCAGTGATATCACAGCTCTCATCAAAAGGATTAGTCCCAAAGGTGTTCTCTCACTGCCTCCGAGGAGATGATCAAGGCGGAGGCACCTTGGTTCTTGGTCAGATTATGGATACAGATATTGTTTTTACTCCTCTCGTTCCAGGTTCCGGGACTCATTACAATTTAGATCTGAGGGGCATCGATGTGAAAGGACAAAAGTTAGCGATTGATTCATCGGTTTTTCAAACACTAGACAACCAAGGCACCGTTGTCGATTCTGGAACAACATTGGCATACCTTCCTGATGGGGTTTATGAATCCTTTGTCAACGCGATTTCGTCTGCTGCTCCAGAAGAATTGCTTACCGGCACTTACGTTAACGTTGGAGATGGATCCCAGTGTTTCTTCACCAAAACCAGCATCTCTGAAGTTTTCCCTAACGTAAGTTTGAACTTTGACGGCGGTGCATCTATGGTTGTTAAACCCAAGGACTACCTTGTACGTCACATGACTTTAGATGACGGTGAAATAGGGTGGTGTGTTGGAATTCAGAAAATGCAGGGTTCTCAAGGGTTCACTATTTTAGGAGATATTGTATTAAAAGATAGAATTGTAGTTTATGATCTGGCTGGTCAACGCATTGGATGGGCTGACTATGACTGCTCGAAGCCCTTCAACGTGTCTGCAGAATTAAACCGTGCACCAGGGTCAAGGTTTGGCACGTCAGGGGGGTGGCCCCATAAGACAGGGACCTTAGCTTTCTTCTTATATTTGACCTACTTCTTCTTGATTTTTTAG 1470 0.4592 MAATFPIGILTATIIALFLYRTTKVTCEFPMTLALERAIPLNNEMKLSDLRALDNARHRRLIQFSNDTTGFSLEGTYDPYVAGLYYTKVQLGSPPRDFHLQVDTGSDPLWVTCSSCSGCPDSTELEIQLSSFDPGKSSTYSPVTCSEAMCNSEYQSPEAVCSRDNRCTYTFQYADDSASAGYYVADLIHFSTPISNGSSPVIFGCSTELRGNLGKNERGVDGIIGFGQGETSVISQLSSKGLVPKVFSHCLRGDDQGGGTLVLGQIMDTDIVFTPLVPGSGTHYNLDLRGIDVKGQKLAIDSSVFQTLDNQGTVVDSGTTLAYLPDGVYESFVNAISSAAPEELLTGTYVNVGDGSQCFFTKTSISEVFPNVSLNFDGGASMVVKPKDYLVRHMTLDDGEIGWCVGIQKMQGSQGFTILGDIVLKDRIVVYDLAGQRIGWADYDCSKPFNVSAELNRAPGSRFGTSGGWPHKTGTLAFFLYLTYFFLIF 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1095 489 Gene3D Acid Proteases 266 453 IPR021109 -
Lele30g1095 489 PANTHER ASPARTYL PROTEASES 29 439 IPR001461 GO:0004190|GO:0006508
Lele30g1095 489 Pfam Xylanase inhibitor C-terminal 283 441 IPR032799 -
Lele30g1095 489 Pfam Xylanase inhibitor N-terminal 85 265 IPR032861 -
Lele30g1095 489 Gene3D Acid Proteases 62 265 IPR021109 -
Lele30g1095 489 ProSiteProfiles Peptidase family A1 domain profile. 85 441 IPR033121 -
Lele30g1095 489 SUPERFAMILY Acid proteases 80 448 IPR021109 -
Lele30g1095 489 FunFam Aspartic proteinase-like protein 2 266 452 - -
Lele30g1095 489 CDD pepsin_A_like_plant 85 445 IPR034161 -
Lele30g1095 489 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Lele30g1095 489 PRINTS Pepsin (A1) aspartic protease family signature 313 324 IPR001461 GO:0004190|GO:0006508
Lele30g1095 489 PRINTS Pepsin (A1) aspartic protease family signature 417 432 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1095 Lele-ChrLele30 14078160 14081316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1095 59 447 Miscellaneous Gene Families AT1G44130 26.829 3.98e-36 136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1109 11 18367555 18369934 Lele30g1095 30 14078160 14081316 CCT
Lele12g0211 12 1742046 1744547 Lele30g1095 30 14078160 14081316 CCT
Lele30g1095 30 14078160 14081316 Lele32g0298 32 1862052 1865108 hybridization