Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1094 ATGGCGGAGGATCGGAACGGCGATAGCAACGAGGCAAGTGATTATAGTTCGGAGGACGAAGGGACCGAGGACTACAGACGAGGAGGTTATTACGCCGTTCGAATTGGCGACACTTTCAAAAATGGGTGCTATGTGGTCCAAAGCAAACTCGGCTGGGGTCATTTTTCTACTGTGTGGCTCGCTTGGGATACCCAGAAATCGCGTTATGTAGCCCTGAAAATTCAAAAGAGTGCCCAGCACTATACCGAAGCTGCAATGGATGAAATAAAGATTCTCAAGCAGATTGCTGAAGGCGACCTGGATGACAAGAAATGCACCGTCAAGCTTTTGGATCACTTTAAGCATTCAGGACCCAATGGCCAGCATGTGTGTATGATTTTTGAATTCTTGGGTGACAATCTTCTGACCGTTATAAAGTATAGTGATTACCGAGGGATTCCTATCTTGATGGTTAAAGAAATTTGTTTGCATATTCTGGTGGGATTGGATTACCTGCATCGTGAGCTATCTATAATACACACAGATTTGAAGCCAGAGAATGTCTTGCTTTTGTCATTGATAGATCCATCTAAAGATCCTAGAAAATCAGGTGCTCCACTTATCCTTCCAAACACCAAGGATAAGACCATTTCAAAAAATGGGGCCACAAAAGACAGTAATAGTTCAAAAGGGGATCTGACCAGGAACCAGAAAAAGAAATTGCGGAAAAAGGCTAAAAAGGCTGCTCAAAGTTGTGTTGAGGAGAGTCTCAAGGAAGGTGAGGAGGATTCTAAACCACCTGAAGTAAAAGATTGTGGTGATGATGTAAAACAGATTGTGGAATCTGTTGAAGATAAACCTAGTAGTCTTGTAACCAAAGATGAATCGTTGGAAGTTGTTGAAACCAAGGACATCCCAAATGGTAGTCATGATCAACTGAAAGTTAGTCGTTCCATGAAAAAGAATTTGCTTGATGCTGTTGATCTTAAATGCAAGCTGGTTGATTTTGGAAATGCTTGTTGGACTTATAAACAATTCACGAATGATATTCAGACAAGGCAGTATAGATGTCCTGAGGTTCTTCTCGGATGCAAATATTCAACTCCGGCTGATTTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTTCCGCAGGTGATGTTCTTTTTTATCCCCACAGTGGTGACAACTATTCAAGGGATGAGGATCATTTGTCATTGATGATGGAACTTCTTGGAACGATGCCTCGCAAGATTGCTCTAGGTGGTCGATATTCTCGAGAGTTCTTTAATAGATATGGTGATTTAAGGCACATCCGCCGGATGCGTTTCTGGCCTCTTAACAAGGTGCTGAGGGAGAAGTATGATTTTAGCGAGCAAGATGCGAATGACATGGCTGACTTCCTTGTTCCCTTACTCGATTTTGCCCCCGAAAAGAGGCCAACAGCTGCTCAGTGCCTTAATCATCCATGGATCTCCACAGGTCCTCGGACTCTTGAGCCCTTAGTGACTACTGTCCAATCTGAGGCCACAGACAAGGAAATGTTTGAAAAGATGAAGGAAAAGGCTGAGTTGGAGACAGTTGCAGTTGGTATGCAGAATATAACCATTGATGGATCTCTAAAGGCATTCAAAGATTCACAGGCTACATAG 1629 0.4291 MAEDRNGDSNEASDYSSEDEGTEDYRRGGYYAVRIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTQKSRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDLDDKKCTVKLLDHFKHSGPNGQHVCMIFEFLGDNLLTVIKYSDYRGIPILMVKEICLHILVGLDYLHRELSIIHTDLKPENVLLLSLIDPSKDPRKSGAPLILPNTKDKTISKNGATKDSNSSKGDLTRNQKKKLRKKAKKAAQSCVEESLKEGEEDSKPPEVKDCGDDVKQIVESVEDKPSSLVTKDESLEVVETKDIPNGSHDQLKVSRSMKKNLLDAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGCKYSTPADLWSFACICFELSAGDVLFYPHSGDNYSRDEDHLSLMMELLGTMPRKIALGGRYSREFFNRYGDLRHIRRMRFWPLNKVLREKYDFSEQDANDMADFLVPLLDFAPEKRPTAAQCLNHPWISTGPRTLEPLVTTVQSEATDKEMFEKMKEKAELETVAVGMQNITIDGSLKAFKDSQAT 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1094 542 FunFam Serine/threonine-protein kinase SRPK-like protein 314 484 - -
Lele30g1094 542 SUPERFAMILY Protein kinase-like (PK-like) 39 495 IPR011009 -
Lele30g1094 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Lele30g1094 542 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 10 501 - -
Lele30g1094 542 SMART serkin_6 44 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele30g1094 542 FunFam CMGC/SRPK protein kinase 30 129 - -
Lele30g1094 542 MobiDBLite consensus disorder prediction 1 23 - -
Lele30g1094 542 MobiDBLite consensus disorder prediction 206 223 - -
Lele30g1094 542 Pfam Protein kinase domain 314 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele30g1094 542 Pfam Protein kinase domain 44 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele30g1094 542 MobiDBLite consensus disorder prediction 195 266 - -
Lele30g1094 542 ProSiteProfiles Protein kinase domain profile. 44 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele30g1094 542 MobiDBLite consensus disorder prediction 240 266 - -
Lele30g1094 542 Gene3D Phosphorylase Kinase; domain 1 20 126 - -
Lele30g1094 542 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Lele30g1094 542 CDD STKc_SRPK 33 484 - -
Lele30g1094 542 Gene3D Transferase(Phosphotransferase) domain 1 127 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1094 Lele-ChrLele30 14072131 14075434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1094 1 532 EF-hand Containing Proteins AT5G22840 65.804 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lele30g1094 Pkinase 6.9e-21 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1108 11 18353208 18365751 Lele30g1094 30 14072131 14075434 CCT
Lele12g0212 12 1747038 1759260 Lele30g1094 30 14072131 14075434 CCT
Lele09g1108 09 20258469 20260839 Lele30g1094 30 14072131 14075434 CCT
Lele10g1076 10 22116462 22121405 Lele30g1094 30 14072131 14075434 CCT
Lele30g1094 30 14072131 14075434 Lele09g1104 09 20210327 20212735 CCT
Lele30g1094 30 14072131 14075434 Lele10g1071 10 22048581 22050999 CCT
Lele30g1094 30 14072131 14075434 Lele11g1104 11 18312679 18314768 CCT
Lele30g1094 30 14072131 14075434 Lele12g0215 12 1795490 1798238 CCT
Lele30g1094 30 14072131 14075434 Lele31g1232 31 18625617 18628947 hybridization
Lele30g1094 30 14072131 14075434 Lele32g0299 32 1867474 1870803 hybridization