Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1088 ATGGAGGCCCCTGTCATCAGATCGAGGGGTCGGCCGAGGAAACGGAGGAGAAAAGAGGATGAAAATGGAACGGATGATGGGAGATCGGTTCCCGATTTAAAAAGGCAAGCTGTCGGGACAAGAAGACCGATAGCACTGGTTGGGCGATATATACTTAAAGAGTTTAAGGGAAGTGGGGTCTTTCTGGGGAAAGTTGTGTATTACGAGTGTGGTTTATATCGAGTAAATTACGATGATGGTGATTATGAGGATTTAGATAGCAGCGAGATTTGTGGAATGCTTCTCAACGACTGTGATCTTGATGATGAGTTGACTAGAAGGAGGAATGAATTAGATCAATTGGTGTTGAAGTATAGTGCCAAGAGAACAGATGGCACGGAGAATAGTTCTGCTGACTTAAGCAAATATGTCCTCGGGCTTGAGGCCCCTGCGTCAAGTGAATTGCCTGGTGGGTTATTGATTGAACACGACGGGGTAGATGCTGAGGAGGATGCTCATTCATCAAGTGACGAAAGAGATTCCGCGTCCGATGCAGAGATACCTTCTCTTCCTCCTCCACTGCAGTTGCCACCGTCTTCAGGGACTATAGGGGTGCCAGAGCCATATGTCTCTCATCTTCTTGCAGTCTACGGATTTTTACGGTCATTCAGCATTCGCCTGTTTTTGAGTCCGTTTTCTTTGGATGATTTTGTTGGTTCTCTTATTTGCCAAGTTTCAAATACTTTGTTGGATTCCATTCATGTTTCACTGATGCGTGCATTGAGGCGTCATCTTGAAACTCTTTCATCTGAGGGCTCAGAGCATACATCAAAATGCTTGAGGTGTAACGATTGGGGCTTGCTTGATGCATTGACTTGGCCTGTTTTTGTTATTCAATATCTAGCAATTTGTGGATACACAAAAGGACCTGAGTGGAAAGGATTTTATGATGAGATTTTTAATGGTGAATATTATTTATTACCTGTAAGTAGGAAGTTGACCATACTGCAAATTCTTTGTGATGACGTTTTGGAGTCTGAGGAAATGAAAGCTGAAATGGGCATTCGTGAAGAATTAGAAGTTGGGATGGAGTATAATGATCAAGATATCCTTCCAGAAGAAAATTGGTCTAGATTCCATCCAAGAAATGCTAAAAATGCTTGCAAGGATAAAGAAGCCACAAAGCTTGTTTTGGAATCTAACGCTGTGAAGCCACCTGGTAACTCTGTTATAGATTTCAGAGACACTAGAAGGACTGAGGATGCTGATGTTGACAGAAATGGAGATGAATGCCGTCTCTGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGATGTCCGTCTGCATACCACTCTAGGTGTATTGGAGTGATGAAAATGTTTATACCAGAAGGGCCATGGTATTGTCTAGAGTGCAAAATTAATATGAATGGGTTAAGCATTGCACGGGGAACATCACTTAGAGGGGCTGAATTATTTGGAATGGATATGTACGGACAACTCTTCATGGGCACTTGCGACCACTTATTGGTGTATGTTCAACTCACTGTCAACAGTGAGCTTTGTCTCGGATATTACAACCAGAATGACATTTCAAAAGTTCTCCAAGTGCTTTACGCTTCAGTAGACCACAGGCCCCTATATGATGGAATTTGTATGGCTGTGTTACAGTATTGGAATATTCCAGGAAGTATCATGCCTGTATCTGTTAGAACTAGAACAGATGTTAACAATTCAAGGACAGAGGAAGATGCAAAGCTCTCTAGTTTATTAACCACTCCTTTGGGTGAAGAAGAGCACGCAACTGTTAATTCAGTGAAGGCAGAATACACTGTAACCAGTGGGATTGTAATTCAGGGTAATTATATGGCTCCATCTGACTCATTGGTTACCACTCCTAGAGAGGCCTGTGCTTTTGAAAGCAGCAATGACAATAGAACTAGAGAGTGCTTTACCATGAATACTATGTTTCCTAAAGAGACTAGAATGGAGTCTGTCATCTCTGGTGGTCATCAGCGCAGTCTCTTTGATATGACCAACAATCATGGACATGCAAATGATAAGCAGTTGCCTTTTACTCCATCCTTGCAACGTAAAGAAGGCAACCAAGCTAGCTCTGGAAAGGTTGAATATAATTCAACTAAGGATCTTGTATACACGGGTTTTTCTTTTAAGCCTCAGTCTTACGTTAATCACTATACGCATGGTGATTTTGCTGCATCTGCTGCTGCTAAGTTGGCTATTCTTTCTTCTGAGGATTCTAGGTCAGAGGGTCATGTTTCAGATAATTTGAGGAAATTTACAGCTGAAAGTGCTTCTTTGCAAGCAAAAGCATTCTCAATGACGGTTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCTTGTGGAAGTTCCAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCTCAGCCTCAAGCAAGAGAGGTTGCATGCTAAATCATGCCGCCCTGAGTGCCACCAAAAGTGCTATCAAAGTTTTAAGCGGTCTTTCCACTGTAAGGGGTGGAGAGGGAATTCTTCCAAGCATTGCGACATATATCATGTATTTGGAGGAAAGTTTACACGGTTTAGTAGTTGGGCCTTTTCTAAATGCAAATTACAGAAAGCAATGGCGTAAACGAGTTGTACAGGCTAAAACATTTAAAGCTATAAAGCCTCCTTTGCTTGAACTTGAGGAAAACATTCGCATAATTTCTTTTGCCGGTGAGTGGGTTAAGCTGATGGATGATTGGTTGGTTGAATCTTCTGTTATTCAAGGTGCTACAAGTTCTGTTGGAACAATACAGACACGTGCCCCAAATGGAAGGCGCTACAAGAAACAATCAGCTATTGATGAAGTTACAGCTGATGTTTCTCATGTAAACAGCTTTGACAGGTGGTATGGTGGTAAATCCATGAAAATATTATTTCTAAAAGCGGTTTTGCCAAAATCTGTGGTCAGAAAAGCTGCTCGTCAAGGTGGGCGGAAGAAAATTTCTGGTATTTCCTATGTTGATGGCTGTGAAATCCCTAGAAGAAGCAGACAGATAGTTTGGAGAGCTGCCGTACAAATGAGTCGGAATGCATCACAGCTTGCACTTCAGGTCAGATACCTTGATTTTCATCTTAGATGGAGTGATCTGATTTGTCCTGAGCAAAATCTCCAGGATGGGAAGGGTCAAGAGACTGAATCTTCTGCATTCAGAAATGCTAACATATGTGATAAGAAAGAAGTGGGGGGAAAACTTTTGTATGGAGTTGTTTTTAGGAACCAAAAGCATCTTCCTTCTCGTATAATGAAAAACATTGTTGAAGTAGAGCAAGGTCAAGAAGGAAAGGAAAAGTATTGGTTTTCTGAAGCACGCGTTCCTTTATATTTTGTAAAAGAGTATGAAGAAGGTATAGAAAAAATGCCATCTCATCAAGAGAACTTGAAGTTGGAACCTCAGCTGCAAAGAAGGCGGTTGAAAGCTGCTTGCAAGGATATATTTTTTTACCTTACCTGCAAGAGAGACAACTGGGATATATTTTCATGTGCTGTATGCCAGATGGATGTTTTAGCTGGGAATGCTCTCAAGTGCAATGCATGTCAAGGTTATTGCCATGAGGGCTGTTCTATAAGTTCAACGTTCTCTACAAACAAGGAGGTTGAGTTCTTAACCACATGCAAGCGCTGTTATGACAAATTGCTTGCTCAAAAAAGGACCAGTGATGAATCTCCAACTAGTCCCTTAGTCTTGCGAGGACAAGAACATAGCTCTGTGACTGTTTTGAAGGGATCAAGACCTAAATGTTATGATCAAGCCTTGAAATCTACCAGTATCAAGAATACTCGTCCTGACATGAAACAGGGCACTCCTAATTCCGCTCTGGCAACAAAAAGCCGTCCCAGGAATAGTTCATGGGGTATTATATGGAATAAGAAGAGTGGTGAGGATACAGGCATTGATTTTTGGCTTAAAAACATACTTCTAAAGGGAGGTTCAAGTACACCTCAATTACAACCTGTCTGTCACTTGTGCCGTATGCCATATCGGTCTGATCTGGTGTATGTTTGCTGTGAGACGTGCAAAAATTGGTATCATGCTGATGCTCTTGAGCTAGAGGAGTCAAAAATTTTTGAAGTTTCAGGATTTAAATGTTGCAAGTGTCGCAGGATCAAATCTCCACAGTGTCCTTACTCTGATAAGAAGCCGAAGATGCAGGAGGGCACTAAGAAACACCGGAGACCTTCAAAGAAGGATAATTCTAGCACAGACAATTTTGGAGTTATTTCTGAACCAAAAGAGCATGAGCCTGGTACCCCTAACTTTCCTATAGGAGATGATGGATCGAGACAAAATGACCCTCTGCTTTACTCTCTTTCAAGTGCCGAGCGGATAGTAGACCCTAATGCAGAAGCGGATGGTGAGAGGAATGCTGTCTCTTGTCCAGGGGTAAGGAAACTACCAGTGAGAAGACATGTTAAGCATGAGGGGGATGGTGATGAATCCTTTGGAACTAAACTTTCACAGGTTGAAATTTTAACACAAAATGGAACAGGTAGTCCGTCAGCTGCAGGGAAGGCATCATCTCCTGTGGAATATGACCCTACTGTTTGCCTAGATAGTAATCTGCTGAATGACTGTGGAAGTGAAAATTATGAATTCATGGACTTTGAACCCCATACCTACTTCTCTGTAACAGAATTGCTGCAGCCAGATGATAATCAGTTCGAGGGAGCTGATGGATCTGAGGACTTGTCTGGATACTTGGAAAATGTTTCTGCCACGAATATAGATGGCATTCCTGACGAATCTGGAGTTCTTAGTTTAGTTGATAAACCAGAACCTGCTGCTTGTTTACCAGGCAGTGGTTATCATTGTTGCCAATGCTTGCAGATGGAACCAGCTCCTGATCTTTCTTGTGAGATTTGTAGGCTTTGGATTCACAGCCAATGTTCACCCTGTGTTGAATCACCTAGATTAGGAAGCTCAAGCTGGAGGTGTGGTAGTTGTAGGGAATGGCAGTAA 4998 0.4218 MEAPVIRSRGRPRKRRRKEDENGTDDGRSVPDLKRQAVGTRRPIALVGRYILKEFKGSGVFLGKVVYYECGLYRVNYDDGDYEDLDSSEICGMLLNDCDLDDELTRRRNELDQLVLKYSAKRTDGTENSSADLSKYVLGLEAPASSELPGGLLIEHDGVDAEEDAHSSSDERDSASDAEIPSLPPPLQLPPSSGTIGVPEPYVSHLLAVYGFLRSFSIRLFLSPFSLDDFVGSLICQVSNTLLDSIHVSLMRALRRHLETLSSEGSEHTSKCLRCNDWGLLDALTWPVFVIQYLAICGYTKGPEWKGFYDEIFNGEYYLLPVSRKLTILQILCDDVLESEEMKAEMGIREELEVGMEYNDQDILPEENWSRFHPRNAKNACKDKEATKLVLESNAVKPPGNSVIDFRDTRRTEDADVDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVMKMFIPEGPWYCLECKINMNGLSIARGTSLRGAELFGMDMYGQLFMGTCDHLLVYVQLTVNSELCLGYYNQNDISKVLQVLYASVDHRPLYDGICMAVLQYWNIPGSIMPVSVRTRTDVNNSRTEEDAKLSSLLTTPLGEEEHATVNSVKAEYTVTSGIVIQGNYMAPSDSLVTTPREACAFESSNDNRTRECFTMNTMFPKETRMESVISGGHQRSLFDMTNNHGHANDKQLPFTPSLQRKEGNQASSGKVEYNSTKDLVYTGFSFKPQSYVNHYTHGDFAASAAAKLAILSSEDSRSEGHVSDNLRKFTAESASLQAKAFSMTVSRFFWPSSEKKLVEVPRERCGWCLSCKASASSKRGCMLNHAALSATKSAIKVLSGLSTVRGGEGILPSIATYIMYLEESLHGLVVGPFLNANYRKQWRKRVVQAKTFKAIKPPLLELEENIRIISFAGEWVKLMDDWLVESSVIQGATSSVGTIQTRAPNGRRYKKQSAIDEVTADVSHVNSFDRWYGGKSMKILFLKAVLPKSVVRKAARQGGRKKISGISYVDGCEIPRRSRQIVWRAAVQMSRNASQLALQVRYLDFHLRWSDLICPEQNLQDGKGQETESSAFRNANICDKKEVGGKLLYGVVFRNQKHLPSRIMKNIVEVEQGQEGKEKYWFSEARVPLYFVKEYEEGIEKMPSHQENLKLEPQLQRRRLKAACKDIFFYLTCKRDNWDIFSCAVCQMDVLAGNALKCNACQGYCHEGCSISSTFSTNKEVEFLTTCKRCYDKLLAQKRTSDESPTSPLVLRGQEHSSVTVLKGSRPKCYDQALKSTSIKNTRPDMKQGTPNSALATKSRPRNSSWGIIWNKKSGEDTGIDFWLKNILLKGGSSTPQLQPVCHLCRMPYRSDLVYVCCETCKNWYHADALELEESKIFEVSGFKCCKCRRIKSPQCPYSDKKPKMQEGTKKHRRPSKKDNSSTDNFGVISEPKEHEPGTPNFPIGDDGSRQNDPLLYSLSSAERIVDPNAEADGERNAVSCPGVRKLPVRRHVKHEGDGDESFGTKLSQVEILTQNGTGSPSAAGKASSPVEYDPTVCLDSNLLNDCGSENYEFMDFEPHTYFSVTELLQPDDNQFEGADGSEDLSGYLENVSATNIDGIPDESGVLSLVDKPEPAACLPGSGYHCCQCLQMEPAPDLSCEICRLWIHSQCSPCVESPRLGSSSWRCGSCREWQ 1665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1088 1665 Pfam PHD-finger 424 466 IPR019787 -
Lele30g1088 1665 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 473 IPR013083 -
Lele30g1088 1665 MobiDBLite consensus disorder prediction 161 193 - -
Lele30g1088 1665 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1321 1397 IPR013083 -
Lele30g1088 1665 ProSiteProfiles DDT domain profile. 200 260 IPR018501 -
Lele30g1088 1665 CDD PHD_SF 1616 1661 - -
Lele30g1088 1665 Pfam DDT domain 203 257 IPR018501 -
Lele30g1088 1665 ProSitePatterns Zinc finger PHD-type signature. 424 465 IPR019786 -
Lele30g1088 1665 SMART testlast3 200 260 IPR018501 -
Lele30g1088 1665 SUPERFAMILY FYVE/PHD zinc finger 1328 1386 IPR011011 -
Lele30g1088 1665 MobiDBLite consensus disorder prediction 1389 1444 - -
Lele30g1088 1665 MobiDBLite consensus disorder prediction 674 700 - -
Lele30g1088 1665 MobiDBLite consensus disorder prediction 1 34 - -
Lele30g1088 1665 MobiDBLite consensus disorder prediction 15 32 - -
Lele30g1088 1665 CDD PHD_SF 1332 1379 - -
Lele30g1088 1665 SUPERFAMILY FYVE/PHD zinc finger 394 467 IPR011011 -
Lele30g1088 1665 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 304 353 IPR028942 -
Lele30g1088 1665 SMART PHD_3 1616 1662 IPR001965 -
Lele30g1088 1665 SMART PHD_3 1173 1222 IPR001965 -
Lele30g1088 1665 SMART PHD_3 423 466 IPR001965 -
Lele30g1088 1665 SMART PHD_3 1332 1380 IPR001965 -
Lele30g1088 1665 MobiDBLite consensus disorder prediction 1272 1291 - -
Lele30g1088 1665 MobiDBLite consensus disorder prediction 161 177 - -
Lele30g1088 1665 ProSiteProfiles Zinc finger PHD-type profile. 421 468 IPR019787 -
Lele30g1088 1665 PANTHER PHD FINGER FAMILY PROTEIN 42 1438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1088 Lele-ChrLele30 14041948 14048628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1088 290 583 EF-hand Containing Proteins AT5G22760 44.408 4.54e-70 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lele30g1088 DDT 7.5e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1088 30 14041948 14048628 Lele31g1227 31 18596803 18603485 hybridization
Lele30g1088 30 14041948 14048628 Lele32g0304 32 1892451 1900004 hybridization