Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1087 ATGGAGGACAGTACGGTCACCAAGTCTTTGAACTCCACGCAGACCGAACAACACATGGCAAGTACGGCCGACATTAACGGGCCCTCTTTTAATTTGGGAGCTGTTGGAGTCCAGAACTCCGCCGTCGGAGGAAATTCCGAGGCTAGCGGTTCGGAGGTTGGGTTGAAGAGGGGAAGGGGAAGGCCTCGGAAGTACGATGGAAACCTTCCGTCTCCAAAATCGACGCCGTCGGGACTCTCAACCTCTCCATCTTCTAAGCGAGGCAGGGGAAGGCCACGTGGCTCTGGAAAGTTGCAGATGTTAGCTTCAATGGGTGGGATCTTTTCAGCCACAGCTGGAGGAAGCTTTATCCCTCATGTAGTCATTGTGAATCCTGGGGAGGATGTTGTGAATAGCATATCATTATTTTGTCATAAGGGCCCTCGAGCTCTTTGCATACTCTCTGCAACTGGTGCTGTATCTGTTGTCGACATTCAGCAACCTGGTTCTTCTGGTCGTTGTTGTTTGAGACATGAGGGTCTCTTTGAGATAATAACTTTATCTGGATCATATACCTTTGATGGCATCAGTGGCGGTACACATCAGAAAAGTCTCACCATGAGAATATCATTAGCTCAACCCGATGGGAGAATATTCGGAGGTAATGTTGGGGGTTCATTGATAGCGGCTGGCCCTATTCAACTAATTCTGGGCAGTTTTAAGCAAAACATCAGTGGTGAAATTAAAAGGCGGCTATCCCCTGGATCTTTTGATGCTGCCGCTGACAGGCCTGGTGATTCAGATGCAGTGAGGCTTTCCTTACAAGTTCCTAAATTGATAGAATCTGAACAGAGCTTTCCTTCACCAACATCTGGACTTATGCCGACATCTAATGGATTTCCTGATCATGTCATGCCTGGAACATCTAATGGATTACCCAACAATGTCACTGCTACGACAACTAACGGTAATGGATTACCAGATTTCTTTTCTCCGAATCAGAACATGCACTCTACCTCGTTGAATGGTGCTAGCCTCGACTGTCAGGTGTTGCAGCCCTTCACAAATCCATTGACATTTGGAGATATCAATATTAATAATAATAATAACAATAGTGTCTCTCAGATGTGA 1110 0.464 MEDSTVTKSLNSTQTEQHMASTADINGPSFNLGAVGVQNSAVGGNSEASGSEVGLKRGRGRPRKYDGNLPSPKSTPSGLSTSPSSKRGRGRPRGSGKLQMLASMGGIFSATAGGSFIPHVVIVNPGEDVVNSISLFCHKGPRALCILSATGAVSVVDIQQPGSSGRCCLRHEGLFEIITLSGSYTFDGISGGTHQKSLTMRISLAQPDGRIFGGNVGGSLIAAGPIQLILGSFKQNISGEIKRRLSPGSFDAAADRPGDSDAVRLSLQVPKLIESEQSFPSPTSGLMPTSNGFPDHVMPGTSNGLPNNVTATTTNGNGLPDFFSPNQNMHSTSLNGASLDCQVLQPFTNPLTFGDININNNNNNSVSQM 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1087 369 CDD DUF296 118 233 IPR005175 -
Lele30g1087 369 SUPERFAMILY AF0104/ALDC/Ptd012-like 115 235 - -
Lele30g1087 369 MobiDBLite consensus disorder prediction 1 97 - -
Lele30g1087 369 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 270 IPR039605 GO:0003680
Lele30g1087 369 SMART AT_hook_2 56 68 IPR017956 GO:0003677
Lele30g1087 369 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Lele30g1087 369 Pfam Plants and Prokaryotes Conserved (PCC) domain 118 234 IPR005175 -
Lele30g1087 369 MobiDBLite consensus disorder prediction 70 88 - -
Lele30g1087 369 PRINTS AT-hook-like domain signature 84 95 IPR017956 GO:0003677
Lele30g1087 369 PRINTS AT-hook-like domain signature 56 66 IPR017956 GO:0003677
Lele30g1087 369 ProSiteProfiles PPC domain profile profile. 113 253 IPR005175 -
Lele30g1087 369 MobiDBLite consensus disorder prediction 1 47 - -
Lele30g1087 369 Gene3D - 118 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1087 Lele-ChrLele30 14034508 14037132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1087 52 244 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 47.716 1.92e-44 155