Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1080 ATGGATGAGGACGAGGACTTGACTGACAGTGAGGATGATGAGGATATACCAGTGTTTGCCAAAGATAATGCAAAACCTGATATAAAGCCTGAAGTAGCAAAGGCTGCTGCATCTAAAAGTAATGATGTCAAGCCCGCTGATTCGAAAAAGCAAGTCAAGGTTGTGGATCCAAAGAAAGAAAATGACTCAGATGACGAAGAGGATGATGAATCAGATGACGAAGATGACAGTTCTGATGAGGATATGTTGGGTGGTGATGTTGATGGTAGTGATGAGAGTGATAGTGATGAAGATGATGATGAAACCCCTTCTAAAAAGGTTGATCAGGCTAAGAAGAGGCCTAATGAATCCGCATTGAAAACTCCTGTTCCTGCCAAGAAAGCAAAATCCGCTACCCCTCAAAAGACTGATGGTAAGAAAGGGGGTCATGTAGCAACTCCTCATCCACTAAAGAAGGATGGAAAAACTCCTAAAAGCGAAACTCCGAAATCCGGCGGACAGTTTACCTGCAAATCATGTAGCAAGACTTTTAACTCAGAAGGGGGTCTGCAACAACATTCAAAGGCTAAGCATGGTGGTCAGTGA 585 0.4325 MDEDEDLTDSEDDEDIPVFAKDNAKPDIKPEVAKAAASKSNDVKPADSKKQVKVVDPKKENDSDDEEDDESDDEDDSSDEDMLGGDVDGSDESDSDEDDDETPSKKVDQAKKRPNESALKTPVPAKKAKSATPQKTDGKKGGHVATPHPLKKDGKTPKSETPKSGGQFTCKSCSKTFNSEGGLQQHSKAKHGGQ 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1080 194 MobiDBLite consensus disorder prediction 132 159 - -
Lele30g1080 194 ProSiteProfiles Zinc finger C2H2 type domain profile. 168 194 IPR013087 -
Lele30g1080 194 MobiDBLite consensus disorder prediction 61 99 - -
Lele30g1080 194 MobiDBLite consensus disorder prediction 43 60 - -
Lele30g1080 194 MobiDBLite consensus disorder prediction 1 194 - -
Lele30g1080 194 SMART c2h2final6 168 191 IPR013087 -
Lele30g1080 194 MobiDBLite consensus disorder prediction 160 185 - -
Lele30g1080 194 MobiDBLite consensus disorder prediction 1 16 - -
Lele30g1080 194 SUPERFAMILY beta-beta-alpha zinc fingers 158 190 IPR036236 -
Lele30g1080 194 Gene3D Classic Zinc Finger 165 194 - -
Lele30g1080 194 ProSitePatterns Zinc finger C2H2 type domain signature. 170 191 IPR013087 -
Lele30g1080 194 MobiDBLite consensus disorder prediction 100 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1080 Lele-ChrLele30 14001802 14004081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1080 114 191 C2H2 Transcription Factor Family AT5G03740 55.056 3.07e-20 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele30g1080 None None None