Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1079 ATGTTTACCCGACGCCGTGGCGTTGAGGTCAAGGCTGGGGCGCCTGTTGAAGTAGACCCAGATGAGTTTGGTAAATGCATACACCTGTCTCAGGCTGCTATTGGAGAGGCAAAGAATAAATCAAGTGAACCTGTGATCATTTATCTGAAGTTTGGTGACCAGAAGCTTGTTTTAGGAACCCTTTCCCAGGAGAAATTCCCTCAACTATCTTTTGATTTGGTTCTAGAGAAGAAGTTTGAGCTCTCTCACAATTGGAAAAATGGAAGTGTTTATTTCTGTGGTTACAAAGCGGAATTACCAGGATATCCTTTGCATTTGTATCAACTTGTTGCCAACTTATTTGTGTCGTTATAA 354 0.4181 MFTRRRGVEVKAGAPVEVDPDEFGKCIHLSQAAIGEAKNKSSEPVIIYLKFGDQKLVLGTLSQEKFPQLSFDLVLEKKFELSHNWKNGSVYFCGYKAELPGYPLHLYQLVANLFVSL 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1079 117 Gene3D Nucleoplasmin core domain 2 99 - -
Lele30g1079 117 FunFam Histone deacetylase HDT1 3 101 - -
Lele30g1079 117 Pfam Nucleoplasmin-like domain 7 95 IPR041232 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1079 Lele-ChrLele30 14001015 14001667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1079 7 98 C2H2 Transcription Factor Family AT5G03740 55.435 2.83e-32 113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1079 30 14001015 14001667 Lele31g1218 31 18533901 18539851 hybridization
Lele30g1079 30 14001015 14001667 Lele32g0312 32 1937487 1938568 hybridization