Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1066 ATGTGTCGTTTCTGTCCTAGGGTGCCGAATATTCGCCAATTTAATTTTTTTGTTTTGGTCAAACAATGTTCGCCCATTTATGAAGTCTTGAAAAAATGGGTTTCTCTCGCACTCTCAGCAAAAGCAAAGGCACAGTCCACTCTTACGGGAGAAATGAGGACACTGTACAATTCTGGAGGGAACCTTGTTAATTTACGATTTTGCCACTGGCCTCAATTCCTCTCCTCGAACGCACCATTTCTTATGCCTTCATCACGAGTGACTTGCCTTTCTCTCAGAACCCCCACTACTGCAATTTTCTACAAGCATAATCTCTTTTCTCCTTCTGGCTCGTCGTCGATTCAAGCATCGATGGCGTCTTCTACCTCATCCGTTGGCACAGAGGATACGAAGCCATTCTCTGTGCTCTTTGTTTGCCTCGGCAACATCTGCAGGAGCCCAACCGCTGAAGGAGTCTTCAGACACTTGGTCAACAAAAGGGCTTTAGATTCCAAGTTCAAAATTGATTCTGCTGGCACCATTAATTACCATGAGGGAAATGAAGCAGACCCAAGGATGAGAGCGGCCTCAAAAAGGCGTGGAATTCAGCTAACCTCTATTTCAAGGCCAATCCAACCATCTGATTTCCGAGATTTTGATCTTATTCTTGCTATGGACAAGCAAAACAGAGGTGAGCTTGAATTAGATCTTTGGGCAGAACTGGACATATTAGAGGCATTCAATAGATGGAAGTCTAGAGATACTTTGCCAGCTGATTCATATAAGAAGGTTAAATTGATGTGCTCATATTGCAAGAAACATGATGAAACTGAAGTCCCTGATCCTTACTATGGCGGACCACAAGGGTTTGAGAAGGTGTTAGATTTGCTTGAAGATGCTTGTGAATCATTGTTGGACGAAGTTTTGGCAGAGCATAAACATTTACAAGAATGA 933 0.4309 MCRFCPRVPNIRQFNFFVLVKQCSPIYEVLKKWVSLALSAKAKAQSTLTGEMRTLYNSGGNLVNLRFCHWPQFLSSNAPFLMPSSRVTCLSLRTPTTAIFYKHNLFSPSGSSSIQASMASSTSSVGTEDTKPFSVLFVCLGNICRSPTAEGVFRHLVNKRALDSKFKIDSAGTINYHEGNEADPRMRAASKRRGIQLTSISRPIQPSDFRDFDLILAMDKQNRGELELDLWAELDILEAFNRWKSRDTLPADSYKKVKLMCSYCKKHDETEVPDPYYGGPQGFEKVLDLLEDACESLLDEVLAEHKHLQE 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1066 310 Pfam Low molecular weight phosphotyrosine protein phosphatase 233 298 IPR023485 -
Lele30g1066 310 Pfam Low molecular weight phosphotyrosine protein phosphatase 135 226 IPR023485 -
Lele30g1066 310 FunFam Low molecular weight protein-tyrosine-phosphatase 132 306 - -
Lele30g1066 310 SUPERFAMILY Phosphotyrosine protein phosphatases I 131 301 IPR036196 -
Lele30g1066 310 Gene3D - 116 306 - -
Lele30g1066 310 SMART LMWPc_2 133 300 IPR023485 -
Lele30g1066 310 CDD LMWPTP 134 299 - -
Lele30g1066 310 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 102 306 - -
Lele30g1066 310 PRINTS LMW phosphotyrosine protein phosphatase signature 211 226 IPR017867 GO:0004725|GO:0006470
Lele30g1066 310 PRINTS LMW phosphotyrosine protein phosphatase signature 135 152 IPR017867 GO:0004725|GO:0006470
Lele30g1066 310 PRINTS LMW phosphotyrosine protein phosphatase signature 178 194 IPR017867 GO:0004725|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1066 Lele-ChrLele30 13902357 13904334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1066 114 304 Protein tyrosine phosphatase (PTP) family AT3G44620 60.748 1.56e-85 256