Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1065 ATGCCGTTATCGGACCGGGGCCTGCCCCTCGCTCTCGACCCAAACGTCCCCTTCAGTTCGAGCAGGCCTACCTCGATGCTTTACCCTCCGCAAACATTTTCTCGAGCAGCTGAAAATGTGTTCTTTTCTTGGTATGAGAAAAGTTATATGCACCGTGATGTAGTTACACATGTTGCTGTTTCAGCTGCAGAATTTTTCATAACTGGGTGTATCGGTGGGCAGTTGAAGTTTTGGAAGAAAAAGCCTATGGGTATTGAATTTGCAAAACACTTCAGATCCCATCTTGGTCCAATTGAAGGTCTAGCCGTTAGCGTCGATGGTCTGCTTTGTTGTACAATATCAAATGATCACTCTGTGAAAATATATGACGTAGTCAACTATGACATGATGGCCATGATTCGTTTGCCATATATTCCTGGTGCTGTTGAATGGGTTTACAAACAAGGAGATGCCAAAGCTAGGCTTGCCATTAGTGATAGAAACTCACCTTTTGTACACATATATGATGCTCGAGCTGGCTCAAATGAACCTATAATCTCCAAAGAGGTGCATTTGAGTCCTATTAAGGTTATGAAGTTCAATCCACTATATGATACTGTTATTTCAGCAGATACAAAGGGGTTAATTGAATACTGGAATCCTACTACACTTCAATTCCCGGAGGACAAGGTGAACTTTAAACTGAAAAGCGATACCAATCTCTTTGACATTGCGAAGTGCAAGATTTCTGTTTCAACTATTGAGGTCTGTCCAGATGGAAAGCAATTTTCCATAACATCACCCGATTGCAGGATACGTGTGTTTTGGTTCAGAACAGGGGATCAAGGCAGTAAAAAAGTAAGAAAGATTCCTTCAGCGGCTGCAAATGCCAATGAGAGCAAGGAGCCTTTGACAGATCCCACTCTTTTGTGTTGTGCCTTCAAAAAACACAGGATATACTTGTTCAGTCGGAGAGAACCAGAGGAGCCTGAAGATGCAACTAAGGGAAGAGATGTATTCAATGAAAAGCCTCCTGCTGATGAACTTTTGGCAGTCTCAGATATTGGAAAGGCAGTTACAACATCACTTCCGGACAATGTGATTATGCACTCTTCTATGGGTGACATTCACATGAAATTATACCCAGAGGAATGTCCAAAAACTGTGGAGAACTTTACAACTCACTGTCGGAATGGCTATTATGATAGCCTTATTTTTCACCGAGTTATTAAAGGCTTCATGATACAAACAGGTGATCCCTTGGGAGATGGCACCGGTGGGCAGTCTATTTGGGGGAGGGAATTTGAGGATGAATTTCACAAAAGTTTAAGACATGATAGGCCTTTCACAGTATCGATGGCAAATGCGGGCCCAAATACAAATGGTTCTCAGTTCTTTATCACCACCGTGGCCACTCCTTGGCTGGACAACAAGCACACTGTATTTGGCAGAGTTGTGAAGGGAATGGATGTCGTCCAGGATCGTTATTAA 1470 0.4279 MPLSDRGLPLALDPNVPFSSSRPTSMLYPPQTFSRAAENVFFSWYEKSYMHRDVVTHVAVSAAEFFITGCIGGQLKFWKKKPMGIEFAKHFRSHLGPIEGLAVSVDGLLCCTISNDHSVKIYDVVNYDMMAMIRLPYIPGAVEWVYKQGDAKARLAISDRNSPFVHIYDARAGSNEPIISKEVHLSPIKVMKFNPLYDTVISADTKGLIEYWNPTTLQFPEDKVNFKLKSDTNLFDIAKCKISVSTIEVCPDGKQFSITSPDCRIRVFWFRTGDQGSKKVRKIPSAAANANESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLAVSDIGKAVTTSLPDNVIMHSSMGDIHMKLYPEECPKTVENFTTHCRNGYYDSLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQDRY 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1065 489 Gene3D - 41 344 IPR015943 GO:0005515
Lele30g1065 489 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 356 489 IPR002130 GO:0000413|GO:0003755
Lele30g1065 489 SUPERFAMILY WD40 repeat-like 53 332 IPR036322 GO:0005515
Lele30g1065 489 Gene3D - 345 488 IPR029000 -
Lele30g1065 489 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 355 487 IPR044666 -
Lele30g1065 489 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 394 411 IPR020892 GO:0003755|GO:0006457
Lele30g1065 489 FunFam Peptidylprolyl isomerase domain and WD repeat-containing 1 341 488 - -
Lele30g1065 489 SUPERFAMILY Cyclophilin-like 355 486 IPR029000 -
Lele30g1065 489 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 399 411 IPR002130 GO:0000413|GO:0003755
Lele30g1065 489 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 470 485 IPR002130 GO:0000413|GO:0003755
Lele30g1065 489 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 373 388 IPR002130 GO:0000413|GO:0003755
Lele30g1065 489 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 442 457 IPR002130 GO:0000413|GO:0003755
Lele30g1065 489 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 457 469 IPR002130 GO:0000413|GO:0003755
Lele30g1065 489 CDD cyclophilin_WD40 361 486 - -
Lele30g1065 489 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 361 486 IPR002130 GO:0000413|GO:0003755
Lele30g1065 489 SMART WD40_4 84 123 IPR001680 GO:0005515
Lele30g1065 489 SMART WD40_4 42 79 IPR001680 GO:0005515
Lele30g1065 489 SMART WD40_4 174 213 IPR001680 GO:0005515
Lele30g1065 489 SMART WD40_4 221 269 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1065 Lele-ChrLele30 13896336 13901866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1065 360 482 U-box Gene Family AT5G67530 49.593 7.16e-34 133