Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1056 ATGATGATGAGAGATCGATACTACAATGTACAAGACAAGACTAATCCTTACTTTCAATATGCTTCTCCAACTTTCATAGAATGGCTCAAGCCATCATCATCATCTTCTTCTTCTTCTGATGAGACTTGTTATCAGAACGAGGTCGTTCGGGAGACTATTCAGTTTCTGCCTCCATCGAAAGACTTGGAAGTGGAAAAGGAGGCTGTGTTTGGATCAGTAGTGAAAGAAGATAAGGTATTGTTGGAGCAAGTTGGGGTGGCTTTGCACATTGGGTTGCCTACTAATTACTCAGAAGACAGTGATCATGGTGGGGCTGATATGAAGAAGAAGGTTAATGATCATGTTAAAGAAGAAGACTATGAAGTACAAGAGGAAGAAGAAGAAGAAGGCTTGATGATGAGGACGACGAAGAGAAGCTTCCATGGATTTAACCAAGAGAGAAGGTTCTGGATACCAACTCCTGCACAGATCCTAATTGGGCCGATGCAGTTTGCTTGCTCCATATGCAGCAAAACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGCCATGGGTCTGAATTTAGGAAAGGACCAGACTCACTTAGAGGAACACAACCGGCAGCAATGTTGAGGCTACCATGTTATTGTTGTGCTCATGGCTGCAAGAACAACATCAACCACCCAAGAGCCAAGCCACTGAAGGACTTCAGAACCCTGCAGACCCATTACAAGAGAAAGCATGGCTCAAAACCCTTCATGTGCAGAAAATGTGCCAAGACTTTCGCTGTGAAAGGAGATTGGAGGACTCACGAGAAGAACTGTGGCAAGCTTTGGTATTGCACCTGTGGTTCAGATTTCAAGCACAAAAGGTCCCTTAAGGATCATATTAGGTCCTTCGGAAAGGGCCACAAACCCCATCCTTCTCTTGAAGGTTTCGAGAAGGACTCTGAAGAAGATGAAGCTATTACTACTACTCACACAAAATCATCTAACACATAA 987 0.4357 MMMRDRYYNVQDKTNPYFQYASPTFIEWLKPSSSSSSSSDETCYQNEVVRETIQFLPPSKDLEVEKEAVFGSVVKEDKVLLEQVGVALHIGLPTNYSEDSDHGGADMKKKVNDHVKEEDYEVQEEEEEEGLMMRTTKRSFHGFNQERRFWIPTPAQILIGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAHGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCAKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHKPHPSLEGFEKDSEEDEAITTTHTKSSNT 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1056 328 Gene3D Classic Zinc Finger 163 186 - -
Lele30g1056 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 268 301 IPR013087 -
Lele30g1056 328 PANTHER ZINC FINGER PROTEIN WIP2 18 318 IPR043584 GO:0003700|GO:0010468
Lele30g1056 328 MobiDBLite consensus disorder prediction 297 320 - -
Lele30g1056 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 164 191 IPR013087 -
Lele30g1056 328 MobiDBLite consensus disorder prediction 293 328 - -
Lele30g1056 328 SUPERFAMILY beta-beta-alpha zinc fingers 234 268 IPR036236 -
Lele30g1056 328 ProSitePatterns Zinc finger C2H2 type domain signature. 166 186 IPR013087 -
Lele30g1056 328 FunFam Zinc finger protein WIP2 217 299 - -
Lele30g1056 328 Coils Coil 108 128 - -
Lele30g1056 328 SUPERFAMILY beta-beta-alpha zinc fingers 160 187 IPR036236 -
Lele30g1056 328 Gene3D Classic Zinc Finger 244 310 - -
Lele30g1056 328 SMART c2h2final6 164 186 IPR013087 -
Lele30g1056 328 SMART c2h2final6 211 243 IPR013087 -
Lele30g1056 328 SMART c2h2final6 248 268 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1056 Lele-ChrLele30 13830253 13833099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1056 18 313 C2H2 Transcription Factor Family AT1G08290 56.677 3.24e-122 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele30g1056 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1070 11 17950104 17954235 Lele30g1056 30 13830253 13833099 CCT
Lele12g0245 12 2163328 2167282 Lele30g1056 30 13830253 13833099 CCT
Lele09g1068 09 19889449 19895931 Lele30g1056 30 13830253 13833099 CCT
Lele30g1056 30 13830253 13833099 Lele31g1189 31 18331239 18334125 hybridization
Lele30g1056 30 13830253 13833099 Lele32g0336 32 2100170 2102960 hybridization