Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1045 ATGTACCAACATCACCAACACCAAGGAAAGGACATCCATTCTTCTTCTTCTTCCTCCAGAATGCCAATCTCAGCTGAGAGGCACATGTTCCTTCAAACTGGAAATGGCTCTGGTGATTCTGGACTTGTCCTCTCCACTGATGCTAAGCCCAGATTGAAATGGACAACAGATCTACATGCCAGGTTTATAGAAGCGGTCAATCAACTAGGTGGAGCTGACAAGGCAACTCCTAAGACAGTAATGAAACTCATGGGAATTCCAGGGCTTACTTTGTATCATCTAAAGAGCCACCTTCAGAAATATAGATTGAGCAAGAATCTGCATGGACAAACTAACAATGTGACACACAAAATCAGTGCAGAAACAGGAGAAAGACTTCCTGAAACAAGTGGAACTCATATGAGTAATTTAAGCCTCACGCCACAGGCAAACAAAGATCTACACATAAGCGAGGCCCTACAGATGCAGATTGAGGTGCAGAGAAGGCTAAATGAACAGCTTGAGGTACAGAGACACTTGCAGCTTCGCATAGAGGCCCAAGGGAAATACCTGCAGACTGTGCTAGAGAAAGCTCAAGAAACACTTGGTAGACAGAATTTGGGTATGGTGGGACTTGAAGCAGCAAAAGTTCAACTCTCAGAGCTTGTGTCCAAAGTATCATCTCAGTGTTTGAGTTCAGCCTTTTCAGAACTGAAGGAACTACAAGGATTCTGCCCACAGCAAACACAAAACAACAACCAGCCAACCGACTGCTCGATGGACAGCTGCCTCACATCCTGCGACGGTGGATCTCAAAAGGAACAAGAAATACAAAATCCATCAGGGATGGGCTTAAGATCCTTCAATGCCCATACATTCATGGAAAGAAAGGAAGACATGGAAGCAACCGTCCCGAGGAACTCTGAGCTCAAATGGTGTGATGAAGTGAAAAAGAACGGCATCTTTCTGAGCAACCCTTTGGGCAAGAGTACGGAAAGACGAGGTTATGCTTCCGAAAGAAGTCCCGGCGACTTGTCTATGAGCATCGGATTTGAACGAGAAACTGAGAATAATAATGGAAACAGCATGTATCCTGAGAGATTAATGATGGGGAGAGAATCAGATGGTGAATTCCAACACCGAAACACGAGTAAGCCAGAATCGATAAAACCGCTGGAAGAGAAGGTTCCTCAGGAGTATAGATTACCTTACTTTGCAGCAACGAGATTGGACCTGAACGCTCGTGAAGAAAACGATGCTGCGATGAGCTACAAACAGCTGGATTTGAATGGCTTCAGCTGGAGCGGATGA 1290 0.4512 MYQHHQHQGKDIHSSSSSSRMPISAERHMFLQTGNGSGDSGLVLSTDAKPRLKWTTDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQTNNVTHKISAETGERLPETSGTHMSNLSLTPQANKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQTVLEKAQETLGRQNLGMVGLEAAKVQLSELVSKVSSQCLSSAFSELKELQGFCPQQTQNNNQPTDCSMDSCLTSCDGGSQKEQEIQNPSGMGLRSFNAHTFMERKEDMEATVPRNSELKWCDEVKKNGIFLSNPLGKSTERRGYASERSPGDLSMSIGFERETENNNGNSMYPERLMMGRESDGEFQHRNTSKPESIKPLEEKVPQEYRLPYFAATRLDLNAREENDAAMSYKQLDLNGFSWSG 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1045 429 Pfam MYB-CC type transfactor, LHEQLE motif 148 194 IPR025756 -
Lele30g1045 429 Pfam Myb-like DNA-binding domain 51 102 IPR001005 -
Lele30g1045 429 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Lele30g1045 429 Gene3D - 48 106 - -
Lele30g1045 429 Coils Coil 150 170 - -
Lele30g1045 429 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 17 282 IPR044848 GO:0003700
Lele30g1045 429 SUPERFAMILY Homeodomain-like 48 104 IPR009057 -
Lele30g1045 429 MobiDBLite consensus disorder prediction 1 20 - -
Lele30g1045 429 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Lele30g1045 429 FunFam Myb family transcription factor 48 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1045 Lele-ChrLele30 13764212 13766530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1045 81 428 G2-like Transcription Factor Family AT3G04030 50.997 1.20e-99 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele30g1045 Myb_DNA-binding 1.2e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1062 09 19835665 19838550 Lele30g1045 30 13764212 13766530 CCT
Lele30g1045 30 13764212 13766530 Lele31g1183 31 18276334 18278975 hybridization
Lele30g1045 30 13764212 13766530 Lele32g0346 32 2170759 2173060 hybridization