Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1036 ATGGAGATCGGATGGCCGACTAACGTGCGCCATGTTGCGCACGTCACATTTGATAGGTTCAATGGCTTCTTGGGTTTGCCTGACGAATTCGAACCTGAAGTGCCCAGAAGGCCTCCGAGTGCTAGTGCAACTGTTTTTGGGGTTTCAACAGAATCCATGCAGTTATCGTTTGACTCCAGAGGGAACAGTGTGCCAACTATTCTGTTGTTAATCCAAAGACGTCTGTATAGTGAAGGAGGTTTGCAGGCAGAGGGTATATTCAGAATTAACGCAGACAATAGTCAAGAGGAATATGTTAGGGAGCAATTAAACAGGGGAGTGGTCCCTGAAGGCATTGATGTACATTGCTTAGCAGGACTTATCAAGGCTTGGTTTAGGGAACTGCCAATAGGCGTTCTGGATTCCTTATCACCTGAGCAAGTAATGAAAAGCCAAACTGAAGAGGAGTGTGCTGAACTAGCAAGGAATCTACCTCCCACTGAAGCCGCCCTCTTGGACTGGGCAATCAATCTCATGGCTGACGTTGTCCAATATGAACATCTGAATAAGATGAATGCACGCAACATTGCAATGGTTTTTGCCCCAAACATGACTCAGATGGCCGACCCTTTGACTGCATTGATGTATGCAGTTCAAGTGATGAACTTCTTGAAGAATCTGATACTAAGGACGCTGCGTGAAAGAAAGGATTCCATAGTAGAATCTTCACCTGGTTTTTATTTAGAGCCCTCTGGTGTTAATAATAGTCACCATAGCCCTATACAATTCTGCCAGCCAGATTCTGCTAAAGATAATGAAGAGGCTCAGGACCCAACAACTGAAAAAACTGTCTCAGAAACTAACCCTGCCTCTGATTCCCTTCAAGAGACTAACTTAACTGGAGCAGAATCTGGCAGTTTGGGAACCTCTTCTGAAAACCCAGTATCTAATGAGGACTTGTATTGTGAGTATCCACCTAAAGGAAATGTTGGGAAGAACAAGACAGTGCAATCAAGCAACTCAAATTCAAGAAAGGGATCCAAGAAAACCAGAGACCAACAATCCTCAAACCAAGGAACAACAACTGTTGAGAAAACTAAGCGAACTGGTAAACTGAGTCGCATAAATTCAAAATCTGAGAAGGCAGAACCATGGCGGTGA 1140 0.4421 MEIGWPTNVRHVAHVTFDRFNGFLGLPDEFEPEVPRRPPSASATVFGVSTESMQLSFDSRGNSVPTILLLIQRRLYSEGGLQAEGIFRINADNSQEEYVREQLNRGVVPEGIDVHCLAGLIKAWFRELPIGVLDSLSPEQVMKSQTEEECAELARNLPPTEAALLDWAINLMADVVQYEHLNKMNARNIAMVFAPNMTQMADPLTALMYAVQVMNFLKNLILRTLRERKDSIVESSPGFYLEPSGVNNSHHSPIQFCQPDSAKDNEEAQDPTTEKTVSETNPASDSLQETNLTGAESGSLGTSSENPVSNEDLYCEYPPKGNVGKNKTVQSSNSNSRKGSKKTRDQQSSNQGTTTVEKTKRTGKLSRINSKSEKAEPWR 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1036 379 SUPERFAMILY GTPase activation domain, GAP 43 222 IPR008936 -
Lele30g1036 379 MobiDBLite consensus disorder prediction 274 310 - -
Lele30g1036 379 CDD RhoGAP 65 221 - -
Lele30g1036 379 ProSiteProfiles CRIB domain profile. 3 16 IPR000095 -
Lele30g1036 379 PANTHER MKIAA1688 PROTEIN 1 348 IPR044785 GO:0005096
Lele30g1036 379 Pfam P21-Rho-binding domain 2 29 IPR000095 -
Lele30g1036 379 SMART PBD_5 3 37 IPR000095 -
Lele30g1036 379 ProSiteProfiles Rho GTPase-activating proteins domain profile. 48 233 IPR000198 GO:0007165
Lele30g1036 379 Gene3D Rho GTPase activation protein 33 239 IPR008936 -
Lele30g1036 379 Gene3D CRIB domain 1 32 IPR036936 -
Lele30g1036 379 MobiDBLite consensus disorder prediction 360 379 - -
Lele30g1036 379 SMART RhoGAP_3 62 225 IPR000198 GO:0007165
Lele30g1036 379 MobiDBLite consensus disorder prediction 244 379 - -
Lele30g1036 379 FunFam Rho GTPase-activating protein 5 33 226 - -
Lele30g1036 379 CDD CRIB 1 41 - -
Lele30g1036 379 MobiDBLite consensus disorder prediction 345 359 - -
Lele30g1036 379 Pfam RhoGAP domain 67 199 IPR000198 GO:0007165
Lele30g1036 379 MobiDBLite consensus disorder prediction 244 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1036 Lele-ChrLele30 13714339 13717311 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0260 12 2250237 2250788 Lele30g1036 30 13714339 13717311 CCT
Lele30g1036 30 13714339 13717311 Lele31g1175 31 18238990 18242628 hybridization
Lele30g1036 30 13714339 13717311 Lele32g0353 32 2210295 2213253 hybridization