Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1033 ATGTTTACTTGTGTGTGTGTTTGCGTAGAGCTTGCGGGAGAGGTGTGTCGTGGAGATACAGAGCAGTGGTTCTTCTTCTCGCCGAGGCAAGAAAGAGAAGCCAGAGGAGGAAGACCCAACAGAACCACTGCTTCGGGATACTGGAAAGCCACCGGTTCTCCTAGTTATGTTTACTCTTCCAATAACAGAGAAATCGGCGTGAAGAAAACGATGGTGTTTTACAGAGGCAAAGCTCCGACTGGAAGGAAAACCAAGTGGAAGATGCATGAATACAGAGCCATTGAACCCTCCAACTCTGACCAATCAGCTGCCTTCATTCCCACGGTATTTATATATATATAGCATTTGATCGACGGCCATTCCAGGCGGCTGGGTTTTAAGGCAACGGAGCTTCTGCTTCTGGTTCTGGGGTCGATAGAGGAAGCTCGTCGGACACTTCAAACTCAGGAGCAGACCATGCAGAAGCGGGAGATCGAGCAGTACAAATCGGAATAA 495 0.4869 MFTCVCVCVELAGEVCRGDTEQWFFFSPRQEREARGGRPNRTTASGYWKATGSPSYVYSSNNREIGVKKTMVFYRGKAPTGRKTKWKMHEYRAIEPSNSDQSAAFIPTVFIYIXHLIDGHSRRLGFKATELLLLVLGSIEEARRTLQTQEQTMQKREIEQYKSE 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1033 164 ProSiteProfiles NAC domain profile. 1 112 IPR003441 GO:0003677|GO:0006355
Lele30g1033 164 Coils Coil 139 159 - -
Lele30g1033 164 SUPERFAMILY NAC domain 13 100 IPR036093 GO:0003677|GO:0006355
Lele30g1033 164 Pfam No apical meristem (NAM) protein 15 92 IPR003441 GO:0003677|GO:0006355
Lele30g1033 164 Gene3D NAC domain 4 116 IPR036093 GO:0003677|GO:0006355
Lele30g1033 164 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1033 Lele-ChrLele30 13698281 13698926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1033 11 130 NAC Transcription Factor Family AT3G44350 63.333 9.47e-49 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele30g1033 NAM 3.9e-17 No_clan