Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1016 ATGTCGGTGAAGGAATGCGGCCACCACCACGATGACGACAACCAGCTCGTCCGCTGGGTAATCGCCGGAGTTGGCGCCTTCATTATCCTCATCCTCTTCGTCATCTTCCTAATCTGGGTCATCCTCCGCCCCTCCAAACCTCACTTCATCCTCCAAGACGCCACCCTCTTCGCCTTCAACTTCTCCTCCTCGCCGGCCACCGCTGCAGGCACTGAACCTCCTGCTTTGACCCCCAACACCATGACCATGACCATGCAAGTCACGCTCTTGGCACGCAACCCCAACGACCGAATCGGGATATACTACCAGAAGTTGACCGTGTACGCGTCGTACAGGAACCAGCAGATCTCGCTGGGCACGATGCTGCCGGCGACGTACCAGGGACACAAGGACGTGACGGTGTGGTCGCCGTTCTTGTACGGGACGGCGGTGCCGGTGTCGCCTTACGTTTTGCAGTCTCTGACGCAGGATCAGAATGCGGGGGGCGTGCTGGTGAACGTGAAGGTGAACGGAAGGGTGAAGTGGAAGGTCGGCTCTTGGGTGTCCGGCAAGTACCATATCTACATCAACTGTCCGGCCTACATCAAGCTCGCCGGAGACGGGATCGGAGCTGCGGGCCCCGCCGTCAGGTATCAGATTATGCAGAGTTGCAGCGTTGATGTTTAG 666 0.5856 MSVKECGHHHDDDNQLVRWVIAGVGAFIILILFVIFLIWVILRPSKPHFILQDATLFAFNFSSSPATAAGTEPPALTPNTMTMTMQVTLLARNPNDRIGIYYQKLTVYASYRNQQISLGTMLPATYQGHKDVTVWSPFLYGTAVPVSPYVLQSLTQDQNAGGVLVNVKVNGRVKWKVGSWVSGKYHIYINCPAYIKLAGDGIGAAGPAVRYQIMQSCSVDV 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1016 221 PANTHER OS05G0367900 PROTEIN 20 219 IPR044839 GO:0098542
Lele30g1016 221 Pfam Late embryogenesis abundant protein 88 191 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1016 Lele-ChrLele30 13595692 13596357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1016 18 191 EF-hand Containing Proteins AT5G21130 21.469 2.29e-07 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1047 11 17758782 17761004 Lele30g1016 30 13595692 13596357 CCT
Lele30g1016 30 13595692 13596357 Lele31g1147 31 18094050 18094715 hybridization
Lele30g1016 30 13595692 13596357 Lele32g0374 32 2328510 2329175 hybridization