Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1013 ATGGATTCTCGGATGGATCAGTATGAGATCATGGAGCAGATCGGTCGTGGAGCTTTTGGAGCTGCTATTTTAGTCCATCACAAGGCTGAGAAAAAGAAATACGTGTTGAAGAAAATCAGGCTTGCACGACAGACTGAACGATGCAGGAGATCTGCTCATCAAGAGATGGCTCTTATTGCCCGAGTCCAGCACCCTTACATCGTGGAATTTAAGGAGGCATGGGTTGAGAAGGGTTGCTATGTCTGCATTGTCACTGGATACTGTGAAGGTGGAGACATGGCTGAATTGATGAAAAAATCAAATGGGGCTCACTTTCCTGAGGAGAAACTCCTTAAGTGGTTTACCCAGTTACTGTTGGCAGTGGAATACTTGCATTCGAACTTTGTTTTACATCGAGACCTGAAGTGTTCCAACATCTTTCTTACCAAGGATCATGATGTACGCCTAGGGGATTTTGGGCTTGCTAAGACCTTAAAAGCAGATGATCTGGCTTCTTCGGTGGTAGGAACTCCCAATTACATGTGCCCTGAATTGCTTGCAGATATTCCTTACGGATTTAAATCTGATATTTGGTCGCTAGGTTGCTGTATATATGAGATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTCGATATGGCAGGATTGATAAGCAAGATAAATCGTTCCTCCATTGGTCCTTTGCCTCCCTTTTATTCCCCATCTTTGAAAACGTTGATAAAGGGCATGCTGAGGAAAAACCCTGAGCATCGACCAACAGCATCTGAGATCTTAAAGCATCCTTATATGCAATCTTACGTTGAACAGTATCGTCCATCTTTCGGTCCTCCAACATCCTGTTCTCCTGAAAAGCCTATTCCTGTTACCCATGATCCTCGAAGAAATATGGTTGAAAGTCAAAACAGTAGCAGTTCAAGCAGCGATAAAGATAGTTTAATGTCAAATGACAAAATCATTTCAACAGTGGTGCAGAAGTGCAATAACAGAACCACTGAAACAGATGTAACCTCCATTGATGACAACGATGGCTCTGAGCATGTCCTGCCTAGCGAAGAAGATACTAGCTCCAGCACTAGCAATGCTAAAGCAGATTGCCAGGAGGTGATGAAACCATCATCTAGTGAACGTCAATCACTTGTTGAATCCAAACCACCAAAAACAATTAAAAACATAATGATGGCACTAAAAGAAGGAAAGGTTAGAGAAAATGGTTCTCCAATGAGAGGCAACCGCATTAAGGCTGTTGGTGCATCGGCACAGAAAACAAACGCAGATACATTGCCTAAATTGCCCAAGTTTAATGCTGTTGCTCCTGGTATCAAGCCAAATTTAGAATCTCCAACTTTGACATCTGCAAAGACATCCCCTGATCCTCCAAAACGAATGCCAAGGTCACATCCTTTAAAGAATCAGGCACTACTGATGATGGACTCTTCACCAAAAACCAAACCCGGACACGATGGGACTGCCCCATCTGGTCCTATTAAACAAGTTGAAGGAGATGGAGTCTCTGCCAAGGTGAGGCAAGGGACCCCCCGTAGTTTACTTAGACAGCCTTCATTCCGAGGAGGAATGAGGCAGGTTGGACTTGATGTACGCAATGCAGCAAATGATACAGAGAAGTTAGGTCCAAAAAAAAAATTGCAGGAGCCAGACAAGAATATTTATAAGGTGCTCAACGGTAATATGCCACGTGCTTCTAGAGAGGTTACAGAGCCTCAGAAGGCTTCTGAAAAATGTTCCAAAGGAATGCAGACAGATAGCAGTAATTCTGTTTCATCTTCAGTGTCTATTCAAGGATATGAACTTTCTGATGATGCAACAAATTTTATTGACATGAGAGAACAGACGCATTCTGATCATGAGAGTGCAACACAGATTGAAACTATACAGTCACATGCAGACAAGAGCCATTATCAGTCACCCAATGGTCATATACCACGGGTTTCTGGAGAGATTACTGAGCCTCAGAAGGCCTCTGAAAAATGTTCCAAAGGAATGCAGGCAGATAGTAGTAATTCTGTTTCATCTTCAGTGTCTATACAAGGATTTGAACTTTCTGATGATGCTTCAAATTTTTTTGCCATGAGAGAACAGACGCCTTCTGATCATGGGAGTGCAACACATATTGAAACTATAAAATCACATCCAGACAGCAGGCCACCTGCTACCTATTTGCACTCTGAGATGGCTGAAACTATATCTAGGGAAGCCTCTGAACCCGGCATGAATCTTCAGAATACAATTACTTATAATGAGAAAGGAAGTTCCGGTTTAACTCTTGATCACCATGCTCCAGATTCCAAGGAAATATTGGCTTCTGAAGATAGTCTCCACATCAATCAGACAAGTACTTCTGCTGCCACCTCATGTGATAATATATCTACAAGTCCCTGTGTTAAAGCCAGCAAGGAAATTAAAGATCTTCAAGATACTACTAAGCAAGTGACTTCAACCCATCCTCCGAAACTCCCACTATTGAGTGCTGGAGAAAATTTTGTTTGTGAAGAAGTCGCTCCAGTAAGCAAGCCCAGTAATAGGTCTGACACAGTTAGCCGGCCAAAACCTGTGCTTGAGTCCACTGGTGATGATAAGTTCACTGTTAAGGAAAGACTGTCATCTGCGGCTGAAACTGCTCCACCAATCACCTCTACCAATGACCAAAAAGGCTCGCAAGAAGACAAAGGAACCATTTTGCATAATCCAGTGATAGAAAGGCCAGCTGTTGGTAATCTTCCTCCAGCTTTTGATGATGTCATCCATGTTATACGACACAGCAGTTACCGAGTTGGGAGTGAGCAACCAGTAAGGGAATCTGTGGAGATGGGAGTTCAAAACTTGGATGTTGGTAAATTTCTCAACGTTGTAAGGGATGATTTAGAAATGAGAACCACGGACTCTCCTCTGACCCACAATTCTTCAAATTGCTCTGAAGCTGCGAGCTTGAAGTCAAACATTTCCGATCAATTAGACGTGAGAAGCATGAGCACTGCTCCAGCTCTAAAACCCTCGAGTTGCTCCAATGCTCTGTGCACAGAGCCAAGTGTCTCTGATCATTCCAGTATGAAGGAACAAGACGTGAAAAATCTTGTTCCTCCAGTATCAAAATCCGATTCCCCTGAGTTGACAAAATGCAACTCTTCAGTGACCGAAGAGGATACCCCAGCAAAGGAAACTTTGGATGTTAAATCATTTAGGCAGAGAGCAGATGCTCTTGAAGGGCTCTTGGAGTTGTCTGCAGAGTTACTGCAACAAAATAGATTGGAGGAGCTTGCTGTTGTTCTAAGGCCCTTTGGGAAAGATATGGTATCCCCAAGAGAGACAGCCATTTGGTTGGCTAAGAGCATAAAGGGAATGATGAACGACGACAATGGTGGACGTTGA 3381 0.4324 MDSRMDQYEIMEQIGRGAFGAAILVHHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARVQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKSNGAHFPEEKLLKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDHDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPFYSPSLKTLIKGMLRKNPEHRPTASEILKHPYMQSYVEQYRPSFGPPTSCSPEKPIPVTHDPRRNMVESQNSSSSSSDKDSLMSNDKIISTVVQKCNNRTTETDVTSIDDNDGSEHVLPSEEDTSSSTSNAKADCQEVMKPSSSERQSLVESKPPKTIKNIMMALKEGKVRENGSPMRGNRIKAVGASAQKTNADTLPKLPKFNAVAPGIKPNLESPTLTSAKTSPDPPKRMPRSHPLKNQALLMMDSSPKTKPGHDGTAPSGPIKQVEGDGVSAKVRQGTPRSLLRQPSFRGGMRQVGLDVRNAANDTEKLGPKKKLQEPDKNIYKVLNGNMPRASREVTEPQKASEKCSKGMQTDSSNSVSSSVSIQGYELSDDATNFIDMREQTHSDHESATQIETIQSHADKSHYQSPNGHIPRVSGEITEPQKASEKCSKGMQADSSNSVSSSVSIQGFELSDDASNFFAMREQTPSDHGSATHIETIKSHPDSRPPATYLHSEMAETISREASEPGMNLQNTITYNEKGSSGLTLDHHAPDSKEILASEDSLHINQTSTSAATSCDNISTSPCVKASKEIKDLQDTTKQVTSTHPPKLPLLSAGENFVCEEVAPVSKPSNRSDTVSRPKPVLESTGDDKFTVKERLSSAAETAPPITSTNDQKGSQEDKGTILHNPVIERPAVGNLPPAFDDVIHVIRHSSYRVGSEQPVRESVEMGVQNLDVGKFLNVVRDDLEMRTTDSPLTHNSSNCSEAASLKSNISDQLDVRSMSTAPALKPSSCSNALCTEPSVSDHSSMKEQDVKNLVPPVSKSDSPELTKCNSSVTEEDTPAKETLDVKSFRQRADALEGLLELSAELLQQNRLEELAVVLRPFGKDMVSPRETAIWLAKSIKGMMNDDNGGR 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1013 1126 MobiDBLite consensus disorder prediction 334 348 - -
Lele30g1013 1126 FunFam Serine/threonine-protein kinase Nek5 90 335 - -
Lele30g1013 1126 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Lele30g1013 1126 MobiDBLite consensus disorder prediction 560 595 - -
Lele30g1013 1126 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele30g1013 1126 MobiDBLite consensus disorder prediction 838 894 - -
Lele30g1013 1126 SUPERFAMILY Protein kinase-like (PK-like) 4 321 IPR011009 -
Lele30g1013 1126 MobiDBLite consensus disorder prediction 698 720 - -
Lele30g1013 1126 Gene3D Transferase(Phosphotransferase) domain 1 90 339 - -
Lele30g1013 1126 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele30g1013 1126 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele30g1013 1126 CDD STKc_Nek 7 262 - -
Lele30g1013 1126 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Lele30g1013 1126 MobiDBLite consensus disorder prediction 577 595 - -
Lele30g1013 1126 MobiDBLite consensus disorder prediction 293 313 - -
Lele30g1013 1126 MobiDBLite consensus disorder prediction 1012 1046 - -
Lele30g1013 1126 MobiDBLite consensus disorder prediction 329 383 - -
Lele30g1013 1126 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Lele30g1013 1126 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 1076 - -
Lele30g1013 1126 MobiDBLite consensus disorder prediction 272 313 - -
Lele30g1013 1126 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Lele30g1013 1126 MobiDBLite consensus disorder prediction 876 891 - -
Lele30g1013 1126 MobiDBLite consensus disorder prediction 438 508 - -
Lele30g1013 1126 MobiDBLite consensus disorder prediction 349 383 - -
Lele30g1013 1126 MobiDBLite consensus disorder prediction 632 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1013 Lele-ChrLele30 13577188 13583660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1013 14 264 MAP Kinase Kinase Kinase AT1G53570 31.250 1.18e-36 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lele30g1013 Pkinase 5.4e-66 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1013 30 13577188 13583660 Lele31g1144 31 18075866 18082239 hybridization
Lele30g1013 30 13577188 13583660 Lele32g0377 32 2340454 2346891 hybridization