Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1008 ATGGGAATTATCCCTACGAATTTCGACATTTTTCTCATTTTTTGCCTGATTGTAGTGGTATACGGTGCCACAGACCCAAATGATCTCAAAATTCTGAATGATTTCAAAAAAGGTCTGGAGAATCCAGAGCTTCTTAAGTGGCCAGACAATGGGGATGATCCTTGTGGTCCTCCTTCATGGCCTTACGTGTTCTGTGCTGGTAACAGAGTCACACAGATTCAGGCCAAGTCTCTGGGTCTTAAAGGAACATTACCTCCATCATTTAACCAGCTCTTAGAGCTCTACAACTTGGGTCTTCAACACAACAAGCTTAGTGGGATGCTGCCTACTTTTAGTGGATTATCCAAATTGGAATTCGCTTTCTTAAATGACAATCAATTTGATGGAATCCCATCTGATTTCTTTGATGGTCTCACCAGTATTCGTGATTTAGCTTTGGCAGAAAATCCATTGAATGCGAGTACTGGGTGGTCTCTTCCTGCGAGTTTAAAAGACTCGGCACAATTAACGAATCTTTCTCTTGTGCATTGTAATATGGTTGGACCAGTCCCTTATTTTCTGGGCACATTGCCGTCTCTTTCAAATTTGCTACTTTCATACAATCGATTGTCTGGCAGTATTCCGAGCAGCTTTGGTCAGTCTACTATGCAGGTTTTGTGGTTGAATAACCAAGATGGTGGTGGGATGACTGGTCCGATTGATGTTATTGCTTCAATGACTTCTCTAACGCAGCTTTGGCTTCATGGAAATCAGTTCACTGGGACAATTCCAAAGAGTATTGGAAATCTAACTTCCTTGATGGATCTCAACCTCAATAGTAATCAACTTGTTGGTTTGATTCCTGAAGGTCTGGCCAATATGGAACTTCGGAATTTGGTGTTAAACAATAACAGGCTCATGGGTCCTATACCAAAGTTTAAGGCTATAAATGTTTCTTATGATTTCAATTTCTTTTGTCAACAGAAGCCTGGCACCGAATGTGCCCCTCAGGTTACTGCTCTGCTTGATTTTCTCAGTAATCTGAATTACCCTTCAATGCTCGCATTTCAATGGTCCGGTAATGAACCGTGTACTGGGTCATGGCTGGGATTGAGCTGCAATCCCAAGTCAGAGGTATCAATTATTAACTTCCCCCACCACAGGCTCAATGGTACTCTGAGCCCCTCACTTGCTAAGTTAGCTTCACTCCATGAGATCAGGCTTGGAGGGAATAATTTAACTGGCCAAATTCCTAGCAGTTTCACTGAATTGAAATCTTTGAAGCTGTTGGATTTAAGTGATAATAACCTTGAGCCCCCATTGCCAAATTTTCATGGTGTGAAGCTTGTTCTTGATGGCAACCCTCTTTTTTCCAACCAAACGGGAAGAAGTCCCCAGCCTATCAGCAGCCCACCACCTTCAAGTTCACAATCTTCACCTCACAACCCACCTCCATCCTCTGAAAGCCCACCTTCCTCAAGTCAGAGTTCAAGCTCAAATTCATCAAGGTCGGGACAAGTACAATCACAAGATGATAAATCTAGAAGATTCAGAACACTAGCAATAGTGGCTGGAGCTTCAATTTTTGCCATTGCAGCTATTTTGGTTATTTTCCTATCCATATATTGCTCAAAGAAGAAGAAGAAGCAAACCTTATTGGATGATTCCAGTTCCATTGTGGTTCACCCTCGAGACCCATCCAATCCAAATGTGGTTAAAATTGCAGTAGCAAACAACACTGCCGGAAGCTCATCATCGAATACTGGGACAAGTTCTTTGAGAAAAGTTAGCGGTGAATCTGAAAGCTCTCACCTGATTGATGCTGGTAGTCTTGTCATCTCTGTTCAAGTTCTACGTAAGGTTACCAAGAACTTTTCTCCAGAAAATGAGCTAGGCCATGGTGGGTTTGGGACTGTCTATAAAGGTGAACTAGAAGATGGGACAAAAATAGCAGTGAAGAGAATGGAGAGCGGAGTTATGAGCAGGAAAGCACTGCATGAGTTTGAGGCTGAAATAGCTGTTCTTTCTAAGGTTCGTCACCGACATTTAGTGTCTCTGTTGGGATACTCCATTGAAGGCAATGAAAGACTTTTGGTGTATGAATATATGCCTTTGGGTGCTCTAAGCAAGCATCTTTTTCATTGGAAAAGCCTGAAACTGGAGCCTTTGACTTGGTCACAAAGGCTTGTGATAGCACTAGATGTTGCTAGAGGAATGGAATACCTTCATAGTCTCGCCCGCCACACCTTCATCCACCGAGACCTCAAGCCTTCGAATATTCTTCTTGATGAAAATTTACGAGGAAAAGTTTCAGATTTTGGCCTGGTGAAACTTGCCCCAGATGGTGAGAAGTCTGTGGTAACTACGCTTGCTGGGACGTTTGGATATCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACCACGAAGGTTGATGTGTTCAGCTACGGTGTTGTGTTGATGGAACTTCTGACTGGACTGATGGCTCTTGATGAGAGCCGGCCAGAGGAGAGCCGATACCTTGCTCAGTGGTTTTGGCAGATTAAATCGAGCAAAGAAAAGCTTATGGCTGCCATTGATCCTGCTTTTCAGGCAACTGAAGAGACTTATGAAAGCATCTCAATTATAACCGAACTTGCTGGACATTGCACTGCTAGGGAGCCAAACCACCGACCAGATATGAGTCATGTAGTCAATGTATTGTCAGCATTAGTAGAGAAATGGGTACCGATCGATGATGAATTGGATTGTTTTACCGGCATTGACGTAGGACGACCACTTTCCCAGATGTTGAAGGATTGGAAGGAAGCAGGAAGCAGAGATGTTAGCTATGCTAGCCCTGAAGACAGCAGAGGCAGCATACCCGCAAAGCCTGTTGGGTTTGCAGACTCCTTTTCTTCCGTCGATGCTCGGTAA 2895 0.4352 MGIIPTNFDIFLIFCLIVVVYGATDPNDLKILNDFKKGLENPELLKWPDNGDDPCGPPSWPYVFCAGNRVTQIQAKSLGLKGTLPPSFNQLLELYNLGLQHNKLSGMLPTFSGLSKLEFAFLNDNQFDGIPSDFFDGLTSIRDLALAENPLNASTGWSLPASLKDSAQLTNLSLVHCNMVGPVPYFLGTLPSLSNLLLSYNRLSGSIPSSFGQSTMQVLWLNNQDGGGMTGPIDVIASMTSLTQLWLHGNQFTGTIPKSIGNLTSLMDLNLNSNQLVGLIPEGLANMELRNLVLNNNRLMGPIPKFKAINVSYDFNFFCQQKPGTECAPQVTALLDFLSNLNYPSMLAFQWSGNEPCTGSWLGLSCNPKSEVSIINFPHHRLNGTLSPSLAKLASLHEIRLGGNNLTGQIPSSFTELKSLKLLDLSDNNLEPPLPNFHGVKLVLDGNPLFSNQTGRSPQPISSPPPSSSQSSPHNPPPSSESPPSSSQSSSSNSSRSGQVQSQDDKSRRFRTLAIVAGASIFAIAAILVIFLSIYCSKKKKKQTLLDDSSSIVVHPRDPSNPNVVKIAVANNTAGSSSSNTGTSSLRKVSGESESSHLIDAGSLVISVQVLRKVTKNFSPENELGHGGFGTVYKGELEDGTKIAVKRMESGVMSRKALHEFEAEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMPLGALSKHLFHWKSLKLEPLTWSQRLVIALDVARGMEYLHSLARHTFIHRDLKPSNILLDENLRGKVSDFGLVKLAPDGEKSVVTTLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLMALDESRPEESRYLAQWFWQIKSSKEKLMAAIDPAFQATEETYESISIITELAGHCTAREPNHRPDMSHVVNVLSALVEKWVPIDDELDCFTGIDVGRPLSQMLKDWKEAGSRDVSYASPEDSRGSIPAKPVGFADSFSSVDAR 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1008 964 MobiDBLite consensus disorder prediction 459 483 - -
Lele30g1008 964 Pfam Protein tyrosine and serine/threonine kinase 621 894 IPR001245 GO:0004672|GO:0006468
Lele30g1008 964 FunFam Receptor-like kinase TMK4 26 324 - -
Lele30g1008 964 Gene3D Ribonuclease Inhibitor 329 453 IPR032675 -
Lele30g1008 964 PANTHER OSJNBA0070M12.3 PROTEIN 11 964 - -
Lele30g1008 964 ProSitePatterns Protein kinases ATP-binding region signature. 624 646 IPR017441 GO:0005524
Lele30g1008 964 FunFam Leucine-rich repeat receptor-like kinase 329 453 - -
Lele30g1008 964 Gene3D Phosphorylase Kinase; domain 1 578 695 - -
Lele30g1008 964 ProSiteProfiles Protein kinase domain profile. 618 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele30g1008 964 Pfam Leucine rich repeat 241 299 IPR001611 GO:0005515
Lele30g1008 964 Pfam Leucine rich repeat N-terminal domain 329 367 IPR013210 -
Lele30g1008 964 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Lele30g1008 964 MobiDBLite consensus disorder prediction 484 501 - -
Lele30g1008 964 Gene3D Transferase(Phosphotransferase) domain 1 696 907 - -
Lele30g1008 964 SMART LRR_typ_2 263 286 IPR003591 -
Lele30g1008 964 SMART LRR_typ_2 91 113 IPR003591 -
Lele30g1008 964 SMART LRR_typ_2 393 416 IPR003591 -
Lele30g1008 964 SMART LRR_typ_2 114 137 IPR003591 -
Lele30g1008 964 SMART LRR_typ_2 239 262 IPR003591 -
Lele30g1008 964 SMART LRR_typ_2 190 214 IPR003591 -
Lele30g1008 964 SMART LRR_typ_2 417 439 IPR003591 -
Lele30g1008 964 FunFam receptor protein kinase TMK1 580 695 - -
Lele30g1008 964 MobiDBLite consensus disorder prediction 932 964 - -
Lele30g1008 964 SUPERFAMILY L domain-like 24 307 - -
Lele30g1008 964 SMART serkin_6 618 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele30g1008 964 Gene3D Ribonuclease Inhibitor 26 325 IPR032675 -
Lele30g1008 964 MobiDBLite consensus disorder prediction 448 507 - -
Lele30g1008 964 SUPERFAMILY Protein kinase-like (PK-like) 598 894 IPR011009 -
Lele30g1008 964 SUPERFAMILY L domain-like 328 447 - -
Lele30g1008 964 FunFam PTI1-like tyrosine-protein kinase 3 696 908 - -
Lele30g1008 964 ProSitePatterns Serine/Threonine protein kinases active-site signature. 743 755 IPR008271 GO:0004672|GO:0006468
Lele30g1008 964 CDD STKc_IRAK 624 894 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1008 Lele-ChrLele30 13545991 13549258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1008 82 912 Receptor kinase-like Gene Family AT1G55610 30.425 5.54e-83 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Lele30g1008 PK_Tyr_Ser-Thr 1.4e-47 CL0016