Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1005 ATGGCTTCCACTTACTTTCATGGCGGGAATTCTGAGATCCAACCCTCTGGGGATGGTTTACAGACGCTTTACCTTATGAATCCAACCTACGTACCTTATTCTGACACTACCTCTCACCACCCCACAACCCCTAACATGCTTCTCTTCAATCCCAACACTTCCCCTTCTGGAAACGCGCTCAACCTCCCCCACGCGCCGCCTCCTTCCCGTGGTCACCACCACCACCTACTTGGCGTCATCCCAACCAACATGGTTGGATCCGAAAACTCTGACATCGCTGCCTTCCATGGCTTCGCCGCCGCTGCCACCACTGCTGCGCCGCGGGTTCATAACTTGTGGGGTTCCATAATCGATCATCAAACACCGTCATCGCCGGCGCCAGTGTCGGCAACCGCACCCAGCAGTTCAGGTACGGCGGCTACTGCCGGTTTCCGAAGGCCTAGTCAGCAGCAAGGCTTGTCACTGAGCCTTTCGTCGCAGCATACAGTTTATAACAGGTCGCTTTCTGGTGAGCTCGATGTGCCGGGACAATCCCGAGTTTCTGCTATATCGCCGACGAGTCACGTCGGTGGTGGGAATGATATGCAGATTCTGGGAAACTCTCCGTCGTCGTCATCGGTTTCGAACGGAATTTCGAGTATGCAGGGCGTGATTTTGGGGTCTAAATATCTGAAGGCGGCGCAAGAACTTCTGGATGAATTTGTGAATGTGGGGAAGGGAATTGAGAAAAGAGGGTCGATAGAGATCGAAGCAAGCAGTGATAAAGAGAAGACGAAAGCGAATAGATCAGAATCGGAATCTGGGAATATTGGAAATGGTTCAAGTGGCGGCAAGCAAGCATCTGAACTCAGCACCGCCCAACGACAAGAGCTTCACATGAAGAAGTCCAAGCTCGTTTCCATGCTTGATGAGGTGGAACAAAGGTACAGGCAGTACAGGCACCAAATGCAGATAGTGATATCTTGGTTTGAACAAGCAGCAGGATATGGAGCAGCAAAGTCATACACAGCAGTGGCATTAGAGACAATATCGAAGCAATTTCGATGTCTTAAAGATGCAGTGTCTTCGCAGATCAAAGCAACGAGCAAGAGCCTGGGCGAAGACGATTTCTTGGGAGCTAAGGTACAGGGTTCCAGGCTACGTTACGTGGATCACCATCTCCGGCAACAGCGAGCTCTGCAGCAGCTGGGAATGATACAGCACAGCGCTTGGAGGCCTCAGAGAGGCTTGCCTGAACGAGCTGTCTCCATTCTTCGTGCTTGGCTTTTTGAGCACTTCCTTCACCCTTATCCCAAGGACTCCGATAAAGTTATGCTTGCAAAACAAACTGGACTTACTCGCAGCCAGGTATCAAACTGGTTTATAAATGCTCGAGTTCGGCTGTGGAAACCAATGGTAGAAGAAATGTACTTGGAAGAAACCAAGGAGCAGAACAACGAGTCCAACCCCAATAAGGACAACACGATTAGATCATCAAAAGAATCAAGGAAGGACGCAGATAATAATGATGCAGCAGCGCACGAAGAATCAGGTTCCATTGATATTAGATCTTCATTTGATCACATTAATAAAGCTCTCCAATCAAAAGCAGATCATCATCATCAAACATTCAACAACCAAACCACCACCACTTCCCTACTCGACATCTCAAATAATCCTCTGATGGTTTCAATGGATGTGGAAATGAAGCCCCGGTTCGTTAAAGATGGGTATAACCCGTTATTAAGTGAAGAGGGTTATGGAGGATTCTCAATGCAAGACATCGGAAGGTTTAACGTTAGTAATGTTTCTGAACAGCATTTAGCACCGAGGTTTCATGGCAACGGTGTTTCCCTCACTTTGGGACTCCCTCATAGTGACAACCTTCCTCTCTCTTCCACTCAACATGACTTTCTCTCTCACAATCTACATTTGGGAACCAATAATGAGACTGAGCTTTGTGCCATCAACTCTGCTCCACCTCCCCCGCCGCCACAGTCTTCTCATTCCGGCGCCGGCAGTTATGAGAATATTGATATTCAGAACAGGAAGAGCTTTGCTGCTCAGTTGTTGTCGGATTTCGTCACCTGA 2070 0.487 MASTYFHGGNSEIQPSGDGLQTLYLMNPTYVPYSDTTSHHPTTPNMLLFNPNTSPSGNALNLPHAPPPSRGHHHHLLGVIPTNMVGSENSDIAAFHGFAAAATTAAPRVHNLWGSIIDHQTPSSPAPVSATAPSSSGTAATAGFRRPSQQQGLSLSLSSQHTVYNRSLSGELDVPGQSRVSAISPTSHVGGGNDMQILGNSPSSSSVSNGISSMQGVILGSKYLKAAQELLDEFVNVGKGIEKRGSIEIEASSDKEKTKANRSESESGNIGNGSSGGKQASELSTAQRQELHMKKSKLVSMLDEVEQRYRQYRHQMQIVISWFEQAAGYGAAKSYTAVALETISKQFRCLKDAVSSQIKATSKSLGEDDFLGAKVQGSRLRYVDHHLRQQRALQQLGMIQHSAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEETKEQNNESNPNKDNTIRSSKESRKDADNNDAAAHEESGSIDIRSSFDHINKALQSKADHHHQTFNNQTTTTSLLDISNNPLMVSMDVEMKPRFVKDGYNPLLSEEGYGGFSMQDIGRFNVSNVSEQHLAPRFHGNGVSLTLGLPHSDNLPLSSTQHDFLSHNLHLGTNNETELCAINSAPPPPPPQSSHSGAGSYENIDIQNRKSFAAQLLSDFVT 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1005 689 MobiDBLite consensus disorder prediction 473 513 - -
Lele30g1005 689 MobiDBLite consensus disorder prediction 264 287 - -
Lele30g1005 689 MobiDBLite consensus disorder prediction 487 513 - -
Lele30g1005 689 ProSiteProfiles 'Homeobox' domain profile. 401 464 IPR001356 GO:0003677
Lele30g1005 689 SMART prehox3 212 356 IPR006563 -
Lele30g1005 689 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 137 491 - -
Lele30g1005 689 FunFam BEL1-like homeodomain protein 9 407 469 - -
Lele30g1005 689 SMART HOX_1 404 468 IPR001356 GO:0003677
Lele30g1005 689 Pfam Associated with HOX 217 355 IPR006563 -
Lele30g1005 689 Pfam Homeobox KN domain 421 460 IPR008422 GO:0003677|GO:0006355
Lele30g1005 689 Gene3D - 407 486 - -
Lele30g1005 689 MobiDBLite consensus disorder prediction 648 668 - -
Lele30g1005 689 SUPERFAMILY Homeodomain-like 405 470 IPR009057 -
Lele30g1005 689 MobiDBLite consensus disorder prediction 252 289 - -
Lele30g1005 689 CDD homeodomain 404 465 IPR001356 GO:0003677
Lele30g1005 689 Coils Coil 295 315 - -
Lele30g1005 689 MobiDBLite consensus disorder prediction 118 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1005 Lele-ChrLele30 13494812 13499343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1005 3 688 Homeobox Transcription Factor Family AT2G35940 41.833 2.89e-134 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lele30g1005 POX 4.3e-48 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1037 09 19557237 19566928 Lele30g1005 30 13494812 13499343 CCT
Lele10g0989 10 21258600 21274098 Lele30g1005 30 13494812 13499343 CCT
Lele30g1005 30 13494812 13499343 Lele31g1138 31 18009092 18012393 hybridization
Lele30g1005 30 13494812 13499343 Lele32g0387 32 2420167 2423686 hybridization