Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1003 ATGGATGAAATCGAAGTTCCTCAGTATTACACGTGTCCCATTTCTCTTCAGATCATGAAGGACCCCGTGACAACATTCACCGGCATAACCTACGACAGAGAAAGCATCGAACAATGGTTGCTCAAGGCCAAAGAACACAAGTGTCCTGTTACCAAGCAGCCATTGCCCAGAGGTTTCGATCTCACTCCCAACCACACCCTCCGCCGTCTCATCCAAGCTTGGTGCTCGGAAAACGCCGCTCACGGCGTCGATCGCATCCCCACCCCTAAATCCCCTCCCTCCAAGACCATCCTCCAGAAACTTCTCAGAAATCTCGACCTTCCCCGTCTGCACCAATCCGCATTGGAGAGATTGCATTCTCTGGCCACAGAAAACCAAAGGAACCTCAAGTGCATGGTAGAATCTGGTGTGGCCGAGTCCATGATTCATCTTATTACGAAAAAGTCCAAGGAGTTAGGTAACAACACTAATTCCCTCGAACAATCTCTGCGAATTCTACGCCTTCTCTGGAGTACTTGCGACAACAACATTATCAAGCCTCTGGTCGTCCACAACATCGACTTCATCAAATCGCTGACTTGGATTCTTCATCTGCACCTGGACACCAACGTCAATCTGATAAACGAAGCAATGCCCGTGTTAAAATCCACCATCGAACTCGCAGATTCAACCCTTTTAGGAAGTTTGAAACCCGAATTCTTCAGGGAAATCACAAGGGTGCTCAAAAACAGATCAATCTCACAACAAACCATGAAATCCGCCTTGCATGTTCTCATAGAAACGTGTCCTTTAGGTCGAAACAGAACGAGGATCGTGGAAGCAGGAGTAGTATATGAATTGATCGAGCTTGAGCTAGAGAAACACGAGAAGAACATAACGGAGCTTATATTTAACCTGCTTGCGCAGCTATGTTCGTGTGCGGACGGGAGAGAACAATTCCTGTCACACGCGGCGGGGTTTGCGGTGGTGTCGAAGAGGGTTCTGAGGGTGTCTCCGGCGACAGACGATAGGGCCGTTCACGTGTTGTGGTTGATGGCGAGGTATTCGGGATCAAACGACGACGTATTGGAGATGTTGAGGGTGGGAGCCGTATCGAAGCTTTGCATGGTGATTCAGGCCATTTGTGATCCGAGTTTGAAAGAGAGAGCGAGATCGATATTGAGACTGCACTCCAATATTTGGAATAATTCTCCTTGTATTCCAGTTTATCTGTTAACCAGGCACGAAAGGTGA 1233 0.4818 MDEIEVPQYYTCPISLQIMKDPVTTFTGITYDRESIEQWLLKAKEHKCPVTKQPLPRGFDLTPNHTLRRLIQAWCSENAAHGVDRIPTPKSPPSKTILQKLLRNLDLPRLHQSALERLHSLATENQRNLKCMVESGVAESMIHLITKKSKELGNNTNSLEQSLRILRLLWSTCDNNIIKPLVVHNIDFIKSLTWILHLHLDTNVNLINEAMPVLKSTIELADSTLLGSLKPEFFREITRVLKNRSISQQTMKSALHVLIETCPLGRNRTRIVEAGVVYELIELELEKHEKNITELIFNLLAQLCSCADGREQFLSHAAGFAVVSKRVLRVSPATDDRAVHVLWLMARYSGSNDDVLEMLRVGAVSKLCMVIQAICDPSLKERARSILRLHSNIWNNSPCIPVYLLTRHER 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1003 410 Gene3D - 95 398 IPR011989 -
Lele30g1003 410 SUPERFAMILY RING/U-box 3 84 - -
Lele30g1003 410 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Lele30g1003 410 PANTHER WDSAM1 PROTEIN 3 401 IPR045185 GO:0061630
Lele30g1003 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Lele30g1003 410 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Lele30g1003 410 Coils Coil 278 298 - -
Lele30g1003 410 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Lele30g1003 410 SUPERFAMILY ARM repeat 97 388 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1003 Lele-ChrLele30 13483499 13484731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1003 2 401 U-box Gene Family AT2G35930 41.975 4.19e-107 320