Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0988 ATGACGCTGGCTGGAGCTCTCGCCATTCTCTTCCTCCTTCTTGCTCTGTACTGTGGGTTAGACCCTTTTGGGCACAGCCCCATAGCTGGCTTCCCGGAGTTCGAAGCTTACAAAATCGACTTGCCGGCTTGGTCCGATGTTCCCACGGACGTTGACGCAGAAAACTTGCTGCAGAAGTCGGAGATTAAGTTTTTGAATCAAGTTCAGGGACCTGAGAGCGTTGCCTTTGACCCTCTTGGTCGTGGGCCTTACACGGGCGTCGCTGATGGGAGAATCTTATTCTGGAATGGGGACTCTTGGACTGATTTTGCTTATACTTCGTCCAACAGGTCAGAAATATGTAATCCTATAGAATCTGCTACACCATTTAGTTATGTGAAGAATGAGCACATCTGTGGAAGACCTTTGGGACTCAGATTTGACAAGAGAACAGGTGATTTATACATCGCAGATGCATACTTTGGGCTAATGAAGGTGGGGCCTCAGGGTGGTTTGGCCACGTCTCTTACAACTGAGGCTGAAGGATTGCCTCTCAGGTTTACGAACGATGTAGATGTTGATGCAGAAGGAAATGTATATTTCACAGATAGCAGTTCTAAATATCCAAGGAGGAATTTCATTCAGCTGGTATTCTCTGGCGAGAATAGTGGCAGGGTTTTGAAATACAACCCCGCCACAGGGGAAACCACTGTTCTTGTCAGGAACGTCCAATTCCCAAATGGCATTTCCTTAAGCAAGGATGGTTCCTTTTTTGTCTTCTGTGGAGGGGCTATTGGCAGGTTGCGTAAGTTCTGGCTAAAAGGCGATAAAGCCGGGACCTCAGAGGTGTTAGCCGTTCTTCCTGGATTCCCAGACAATGTGAGAGTGAATGAGGAAGGAGACTTTTGGGTGGCTCTTCATTGTCGAAGGTATATGTACAGTTACATAAACGGTCACTACCCAAAGGTCAGAAAATTCATACTCAAGCTTCCAATTCCAACAAGGGTTCAATACTTACTTCAGATAGGATTGAGGGTCCATGCATTAGTTGTTAAGTATAGCCCTGAGGGCAAGCTTCTGCAGATATTGGAGGATAGTCAAGGAAAAGTTGTTAGAGCTGTGAGTGAAGTGGAAGAAAAGGATGGTAAACTCTGGATTGGAAGTGTTCTCATGCCTTTTCTTGCAGTTTATGATCTGAAATAA 1182 0.4577 MTLAGALAILFLLLALYCGLDPFGHSPIAGFPEFEAYKIDLPAWSDVPTDVDAENLLQKSEIKFLNQVQGPESVAFDPLGRGPYTGVADGRILFWNGDSWTDFAYTSSNRSEICNPIESATPFSYVKNEHICGRPLGLRFDKRTGDLYIADAYFGLMKVGPQGGLATSLTTEAEGLPLRFTNDVDVDAEGNVYFTDSSSKYPRRNFIQLVFSGENSGRVLKYNPATGETTVLVRNVQFPNGISLSKDGSFFVFCGGAIGRLRKFWLKGDKAGTSEVLAVLPGFPDNVRVNEEGDFWVALHCRRYMYSYINGHYPKVRKFILKLPIPTRVQYLLQIGLRVHALVVKYSPEGKLLQILEDSQGKVVRAVSEVEEKDGKLWIGSVLMPFLAVYDLK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0988 393 PANTHER STRICTOSIDINE SYNTHASE-RELATED 7 385 - -
Lele30g0988 393 Gene3D - 53 393 IPR011042 -
Lele30g0988 393 Pfam Strictosidine synthase 182 268 IPR018119 GO:0009058|GO:0016844
Lele30g0988 393 Pfam Strictosidine synthase-like, N-terminal 57 94 - -
Lele30g0988 393 FunFam Putative strictosidine synthase 54 393 - -
Lele30g0988 393 SUPERFAMILY Calcium-dependent phosphotriesterase 46 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0988 Lele-ChrLele30 13377953 13381297 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0988 30 13377953 13381297 Lele09g1018 09 19359576 19360766 CCT
Lele30g0988 30 13377953 13381297 Lele10g0975 10 21011054 21012256 CCT
Lele30g0988 30 13377953 13381297 Lele11g1025 11 17404746 17405936 CCT
Lele30g0988 30 13377953 13381297 Lele12g0302 12 2776733 2777935 CCT
Lele30g0988 30 13377953 13381297 Lele31g1125 31 17894104 17896954 hybridization
Lele30g0988 30 13377953 13381297 Lele32g0401 32 2547787 2551119 hybridization