Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0987 ATGGCAAAGAGGTTGATGCAAGTTGTAAAAGCTGAAGGGCTTCAAGTCAACGAGATTGCTCTTGAGGAGCTAGCAGAAAGAGTTAATGGAGATATGCGCATGGCAATAAATCAGTTACACTATATGAGCCTCTCCATGTCTGTTATTAACTATGACGACATCAGGCAACACCTTTTTTCTAGCTCGAAGGATGAGGACATTTCGCCATTCACTGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAGTTAAAAATGGATGAGAGGATTAATCTTAGCATGAGTGATCCTGACCTCGTTCCTCTTCTTATTCAGCACAATCTGGAAGTTCAAATTAGTCTTTGCGAAAATTATATTAATTATAGACCAAGTTTGGCTAGTAAAGATGACAATGATATGAAGCGCATGAAGTTAATTGTCCGGGCTGCTGAGTCTATTGCTGATGGAGATATAGTGAATGTACAGATTCGAAGATATCGACAGTGGCAGCTCTCTCAAGCTAGTACTCTTGCATCGAGTATTATTCCGTATGGAGAATGGAATTATAATCGGTTTGGTGGTTGGCTGGGCAAAAACTTTAGGCTTTTGGAAGAACTGCATGTTCACATTCTTGCTTCTCGTGAATCCAGTCCAGGAAGATTTAGGGACTTGGTAGTTCTTGATTTGTTGCAGGGAAACGCTCCGTTTGGATTATCTAAAAGACTAAAACCACTTCTTCAACAGTTGACAGAACCACTGCAAGTGTTGCCTAAGGATGAAGCTGTTCAGAAAGTTGTGGAATTTATGAATATGTACTCAATCAGTCAAGAGGATTTTGATACTATTGTTGAACTATCAAAATTCAAGGGTCATCCAAATCCACTAGATGGCGTACCGCCTGCTGTTAAATCTGCACTGACAAAAGCATACAAAGAAGAAAGCAAGTGTCGGATGGTTCGAGTTGCAGATCTAGCCACTATTCCTGGAAAGAAAAAGGCTGTTGAGAAGCGAGTTGCTGCTATCCTAGAACCATCCGACGGACTGGAACTGGGTGAAGGTTATACCCTGGGAGAGAGTGAAGGAGAGAATTCCTCGGACACAGGGGAGTCAGCCATGCGAGTACAATTGGATTTGAAGGGAACAGGAAATTCAAGTGCCAAGAAGACACCAGCTGGAAGAGGTAAAGGTGCTTCTGCATCGGCCGAGAAGGGTGGTCAAGCTTCAAGAGTTAGAGGTGGGGCAAAAAGAAAGAGGTGA 1236 0.4248 MAKRLMQVVKAEGLQVNEIALEELAERVNGDMRMAINQLHYMSLSMSVINYDDIRQHLFSSSKDEDISPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLLIQHNLEVQISLCENYINYRPSLASKDDNDMKRMKLIVRAAESIADGDIVNVQIRRYRQWQLSQASTLASSIIPYGEWNYNRFGGWLGKNFRLLEELHVHILASRESSPGRFRDLVVLDLLQGNAPFGLSKRLKPLLQQLTEPLQVLPKDEAVQKVVEFMNMYSISQEDFDTIVELSKFKGHPNPLDGVPPAVKSALTKAYKEESKCRMVRVADLATIPGKKKAVEKRVAAILEPSDGLELGEGYTLGESEGENSSDTGESAMRVQLDLKGTGNSSAKKTPAGRGKGASASAEKGGQASRVRGGAKRKR 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0987 411 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 1 388 - -
Lele30g0987 411 SUPERFAMILY post-AAA+ oligomerization domain-like 67 204 IPR008921 GO:0003677|GO:0006260
Lele30g0987 411 Gene3D - 1 66 - -
Lele30g0987 411 MobiDBLite consensus disorder prediction 351 381 - -
Lele30g0987 411 CDD HLD_clamp_RFC 1 54 - -
Lele30g0987 411 Gene3D - 68 183 - -
Lele30g0987 411 Pfam Replication factor RFC1 C terminal domain 146 304 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Lele30g0987 411 MobiDBLite consensus disorder prediction 343 411 - -
Lele30g0987 411 FunFam Replication factor C subunit 1 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0987 Lele-ChrLele30 13372392 13375605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0987 1 364 Core DNA Replication Machinery Family AT5G22010 63.446 4.88e-155 459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0987 30 13372392 13375605 Lele31g1124 31 17884439 17891645 hybridization
Lele30g0987 30 13372392 13375605 Lele32g0402 32 2552744 2556577 hybridization