Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0986 ATGGATCGTCGCATCCATGGCGTCACCACGCTCTGCATCTCTCTTCTCCTTCTTCTTTCCGGCTTCCCCTTTCTCTCATCCTCGGATTCTCCAAATCCCAGATTGTCGGTTGCTTCTTCCTCCGGTCAAATAAACTCCAACTCAGTTCTGGTGGCTCTTCTGGATTCGCATTACACGGAACTCGCCGAGCTGGTCGAGAAGGCCATGCTTTTGCAGACTCTCGAAGACACTGTCGGTGCCAACAACATCACCATCTTCGCACCCAGAAACGAAGCTCTCGAGCGCGATCTCGACCCTGAGTTCAAGTGCTTCCTTCTCGAACCCGGTAATCTCAAGTCTCTTCAGTCCTTGCTCATGTTTCATATCATTCCCACTCGGATTGGATCGCAGGCGTTGCCCACTGCAACCGGGTCAGCCCGTCACGAGACGCTCTTTAAGTCCGAGTTCGTTCACCTTGCCAATAATGGCACCGGGGAATGGACAGTGGATCGCGCCAAGATCATCCACCCCGACGTAGTCTCCCGACCCGATGGAGTGATCCACGGGATTGAGCGCCTCCTGGTCCCTCGTTCCGTCCAAGATGACTTCAACAGCCGGCGGAGTCTTCAGTCCATTACGGCGGTGAAGCCCGAGGGAGCACCGGAGGTTGACCCGAGGACTCATCGCCTCAAGAAGCCTGCTCCTCCGGTTAAACCAGGTTCGCCGCCAGTTTTGCCCATTTACGACGCCATGGCTCCGGGGCCCTCTCTGGCGCCCGCCCCAGCTCCCGGTCCCGGTGGACCACACCATCATTTCAACGGCGAAGCCCAGGTCAAGGATTTCATCCAGACACTTCTTCATTACGGTGGGTACAATGAAATGGCCGACATTTTGGTGAATCTGACATCCTTAGCAACTGAAATGGGTCGGTTAGTGTCTGAGGGTTATGTCCTAACTGTTTTGGCTCCGAACGATGAAGCCATGGCTAAACTAACCACGGACCAGCTGAGCGAACCGGGTGCTCCGGAGCAGATAATGTACTACCATCTAATACCTGAATATCAAACCGAAGAGAGTATGTACAATTCAGTTCGAAGGTTTGGTAAGGTCAGCATAGAAGAGGAAAATTGCTGGAAGCTGCATGCCGGATGCTTGGAACCTTTGGACAGGATTCTATATTCACCACTTGTCATTGAAGAACCAGTCCTTTGGCTGGCAACATACGTATTCACAATTATATTGGTGGAAGTCCCAAAGATGTAA 1242 0.5274 MDRRIHGVTTLCISLLLLLSGFPFLSSSDSPNPRLSVASSSGQINSNSVLVALLDSHYTELAELVEKAMLLQTLEDTVGANNITIFAPRNEALERDLDPEFKCFLLEPGNLKSLQSLLMFHIIPTRIGSQALPTATGSARHETLFKSEFVHLANNGTGEWTVDRAKIIHPDVVSRPDGVIHGIERLLVPRSVQDDFNSRRSLQSITAVKPEGAPEVDPRTHRLKKPAPPVKPGSPPVLPIYDAMAPGPSLAPAPAPGPGGPHHHFNGEAQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHLIPEYQTEESMYNSVRRFGKVSIEEENCWKLHAGCLEPLDRILYSPLVIEEPVLWLATYVFTIILVEVPKM 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0986 413 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 5 365 IPR044654 -
Lele30g0986 413 Gene3D FAS1 domain 49 190 IPR036378 -
Lele30g0986 413 ProSiteProfiles FAS1/BIgH3 domain profile. 271 413 IPR000782 -
Lele30g0986 413 Pfam Fasciclin domain 296 358 IPR000782 -
Lele30g0986 413 Pfam Fasciclin domain 57 189 IPR000782 -
Lele30g0986 413 SUPERFAMILY FAS1 domain 42 190 IPR036378 -
Lele30g0986 413 Gene3D FAS1 domain 263 369 IPR036378 -
Lele30g0986 413 SUPERFAMILY FAS1 domain 250 357 IPR036378 -
Lele30g0986 413 ProSiteProfiles FAS1/BIgH3 domain profile. 45 187 IPR000782 -
Lele30g0986 413 SMART fasc_3 84 190 IPR000782 -
Lele30g0986 413 SMART fasc_3 312 388 IPR000782 -
Lele30g0986 413 MobiDBLite consensus disorder prediction 207 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0986 Lele-ChrLele30 13368279 13371185 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0986 30 13368279 13371185 Lele09g1017 09 19310199 19312434 CCT
Lele30g0986 30 13368279 13371185 Lele11g1023 11 17382968 17385852 CCT
Lele30g0986 30 13368279 13371185 Lele31g1123 31 17880089 17882943 hybridization
Lele30g0986 30 13368279 13371185 Lele32g0403 32 2557789 2560708 hybridization