Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0970 ATGGCCAGAGAGGGTGGACTCTCCATTGATTTAGATCCAGCTTTGAGCAGCTTCTTCCTCTCCAATCCCATTGTTCTCAACTCTTTCCCTATCGAAGACTACGCTCTTCAACCCCCCATGGACTCTTCAATCCCTTTCCCTGAGATGGACTTCTTCTCTTACAGTAACAATCTCAAGCCTGAATCTTCCAACGCCGATTCCTCTACCCCTCCTCATCCTCTTGAATTCAAAGTAAACACTGGTCTGAATCTCTTGAATACTAACACCGATCAATCCCTTGGGGACGATGAGCTTGCCATATATTCTAATTTTCGAGACAAACGACCCAAGATTGAGTTTCAGACTGAGATTGCTGTTGTTCAAGCCGAGCTAGAGGAGATGATAGGAGAGAATCATAAGCTGAAAGACATGCTAAATAAGGCTAACACCGATTACAATGACCTGAAGATTCATATAAACTTTATCGAGTCTCGCAAGGGCGGTGATGAGGACGCTGAGAAACCTGAAAACAAAGCGCTTGATGTAAGTCCAGAAGAAAACAAACAAACTGAGAGTAAAAGAGGAACATTAGTGCCAAGGCAATTTATAGATCTCGGATTAGCTTCAATCAATGAAGGTGATCAGGCTAATAGCGATCAGACTTCGCCTTCTTCGTCCATAAGGAGAAGCGGTGACAGATCAAGATCACCCTCGGGAGTGGAATGCAGAGCCAGAATTGGTTCCGCTAAGAATGAATTCAACAAAGAAACTGAAATTGAACATGAAGCTAAAAAAGTTCAAAAGTATAGTCCTGCTCCAGAAAAAGTTGATGATCAAGTGGAAGCAATTATGAAGAAGGCAAGAGTTTCAGTTAGAGCTCGATCAGAAGCACCTATGATTACTGATGGATGTCAATGGAGGAAATATGGACAGAAGATGGCTAAAGGGAATCCATGCCCTCGAGCTTATTATCGTTGCACTATGTCTCCAGGCTGTCCTGTTAGAAAACAGGTGCAAAGGTGTGCAGAGGATCGAACAATTTTAGTAACAACGTATGAAGGAAATCATAGCCACGCGTTGCCTCCAGCAGCAATGACAATGGCACAAACAACATCAGCAGCAGCAAAGATGTTGCTTTCAGGATCAATGTCAAGCAATGATGGTCTAACGAATGGAAGCTTCTTGACAAGGACGGCATTGCTTCCCTGTTCTTCAAGTAACATGATAGCAACTCTCTCAGCCACAGCTCCATTTCCAACTGTTACGTTGGACTTAACTATTCCTCCAACAACGCAACCTTCTACCCAATTCCAGATGCCTTTCTCAAATAATAATGCGTCTCTTGGTTTCAGTCAAGCTTTGGCTCAAGCACTTTGTAGCAGCAATCAATCAATTTTTTCAGGGCTTCAAATGAACAACAAAGACCCTTTGCCATTTAGTGCTGCCATAGCAACTAACCCTAACTTCACAGCGGCTTTAACGGCGGCTATTACTTCTATTATGAGTTCTGCCCTGCCAAAGAACGTTAACAGTGACAATAATGGCAATGTTGCAAGTGGCAATAACAATGATTCAAATTTCTCAGGAAACTAG 1572 0.4288 MAREGGLSIDLDPALSSFFLSNPIVLNSFPIEDYALQPPMDSSIPFPEMDFFSYSNNLKPESSNADSSTPPHPLEFKVNTGLNLLNTNTDQSLGDDELAIYSNFRDKRPKIEFQTEIAVVQAELEEMIGENHKLKDMLNKANTDYNDLKIHINFIESRKGGDEDAEKPENKALDVSPEENKQTESKRGTLVPRQFIDLGLASINEGDQANSDQTSPSSSIRRSGDRSRSPSGVECRARIGSAKNEFNKETEIEHEAKKVQKYSPAPEKVDDQVEAIMKKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMSPGCPVRKQVQRCAEDRTILVTTYEGNHSHALPPAAMTMAQTTSAAAKMLLSGSMSSNDGLTNGSFLTRTALLPCSSSNMIATLSATAPFPTVTLDLTIPPTTQPSTQFQMPFSNNNASLGFSQALAQALCSSNQSIFSGLQMNNKDPLPFSAAIATNPNFTAALTAAITSIMSSALPKNVNSDNNGNVASGNNNDSNFSGN 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0970 523 ProSiteProfiles WRKY domain profile. 288 354 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele30g0970 523 Gene3D WRKY domain 278 355 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele30g0970 523 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 102 507 IPR044810 GO:0003700
Lele30g0970 523 MobiDBLite consensus disorder prediction 204 226 - -
Lele30g0970 523 SUPERFAMILY WRKY DNA-binding domain 286 354 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele30g0970 523 SMART WRKY_cls 293 353 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele30g0970 523 Coils Coil 117 144 - -
Lele30g0970 523 MobiDBLite consensus disorder prediction 159 234 - -
Lele30g0970 523 MobiDBLite consensus disorder prediction 159 186 - -
Lele30g0970 523 FunFam probable WRKY transcription factor 31 278 355 - -
Lele30g0970 523 Pfam WRKY DNA -binding domain 295 351 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele30g0970 523 MobiDBLite consensus disorder prediction 501 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0970 Lele-ChrLele30 13293623 13296095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0970 78 494 WRKY Transcription Factor Family AT1G62300 46.288 2.99e-100 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele30g0970 WRKY 5.9e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1015 11 17259513 17263001 Lele30g0970 30 13293623 13296095 CCT
Lele12g0306 12 2854208 2858054 Lele30g0970 30 13293623 13296095 CCT
Lele30g0970 30 13293623 13296095 Lele31g1111 31 17810672 17813129 hybridization
Lele30g0970 30 13293623 13296095 Lele32g0417 32 2629869 2632289 hybridization