Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0967 ATGGATTGGAGCAGAGGCCATACCTTAGGCCGCGGCTCCTCCGCCACCGTCTCTCTGGCTTCCTCCTCCTCCTCCTCCGACCTCGTCTTCGCCGTCAAGTCATCGGAGCTCTCTCGCTCTCTGTTCTTACAGAGAGAACAGAGTATCCTTTCTACGGTTTCTTCTCCTTATATTGTTGCCTATAAAGGGTGTGATGTTACTAGAGAGAATAACAAGCTCTTTTACAATCTCTTCATGGAGTACATGCCCTTCGGTACTGTTCTTCAGGCGGTTCAACGGCACGGTGGCCGTCTTGACTTGGGGGTGGTGGGGTTCTACACGTGGCGGATTTTGCAGGGGCTGGAGTATTTGCATTCCAACGGGTTGGTACATTGTGACATTAAGAGCACCAACATATTGATTGGTGAAGATGGAGCGAAGATTTCGGATTTTGGGTGTGCCAAGCGGGTTGATGTTGACACGGCAGCGCCGATCAGCGGGACGCCGATGTTTATGGCGCCGGAGGTAGCGCGTGGGGAAGAACAGGGTTGTGCTGGTGATATTTGGGCACTTGGGTGCACAGTGATCGAAATGGCTTTTGGGGTTTCGCCGTGGCCGAACATGGCGGACCCTTTATCGGTTCTTCACCGTATCTCATATTCCGGCGAGACGCCTGAGATTCCAGGGTTTCTACCGGAGGAAGCAAAGGATTTCTTAGACAAGTGCTTGAGGAGGAATCCGACAGAGAGATGGACGGCTACTCAACTGTTAAAACACCCATTCGTCACGGAATTCAATTCGAAATCCATCGACAAGGAAATTCAAAAACTCAATTCAAGTTCACCTACATGCGTACTTGAGCAGGGGTTTTGGAATTCCATGGAAGAATCGGAAACTCACGGAAATTTGATCCGTACGAGGTTAGAAAATTCTGCCGCCTATAGAATCAGAAGGTTAGCTGAGTTCTCATCAGAAACCAGATGGACACGTGATGATAATTGGATCACAATCAGAGGAAACGACAAAGCATCAGCTTCCACCAGCGACGATGGTTCGGAAGAGTCGGTGAGAAGCAACTTTAGAAGTAGAATTAGGGGGTATTTCACCGGAAATTATGAATTTAGCGAAATTAGTGATATGATTAGTATTCATTACAATTTTGAGTGA 1146 0.4825 MDWSRGHTLGRGSSATVSLASSSSSSDLVFAVKSSELSRSLFLQREQSILSTVSSPYIVAYKGCDVTRENNKLFYNLFMEYMPFGTVLQAVQRHGGRLDLGVVGFYTWRILQGLEYLHSNGLVHCDIKSTNILIGEDGAKISDFGCAKRVDVDTAAPISGTPMFMAPEVARGEEQGCAGDIWALGCTVIEMAFGVSPWPNMADPLSVLHRISYSGETPEIPGFLPEEAKDFLDKCLRRNPTERWTATQLLKHPFVTEFNSKSIDKEIQKLNSSSPTCVLEQGFWNSMEESETHGNLIRTRLENSAAYRIRRLAEFSSETRWTRDDNWITIRGNDKASASTSDDGSEESVRSNFRSRIRGYFTGNYEFSEISDMISIHYNFE 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0967 381 ProSiteProfiles Protein kinase domain profile. 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele30g0967 381 FunFam Mitogen-activated protein kinase kinase kinase 17 2 309 - -
Lele30g0967 381 SUPERFAMILY Protein kinase-like (PK-like) 2 277 IPR011009 -
Lele30g0967 381 Pfam Protein kinase domain 5 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele30g0967 381 SMART serkin_6 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele30g0967 381 Gene3D Transferase(Phosphotransferase) domain 1 2 334 - -
Lele30g0967 381 ProSitePatterns Protein kinases ATP-binding region signature. 9 33 IPR017441 GO:0005524
Lele30g0967 381 CDD STKc_MAPKKK 2 255 - -
Lele30g0967 381 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 342 - -
Lele30g0967 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0967 Lele-ChrLele30 13276261 13277406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0967 1 287 MAP Kinase Kinase Kinase AT2G32510 56.314 3.06e-111 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lele30g0967 Pkinase 2.5e-52 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1012 11 17230956 17231345 Lele30g0967 30 13276261 13277406 CCT
Lele12g0308 12 2876701 2877090 Lele30g0967 30 13276261 13277406 CCT
Lele09g1011 09 19179837 19183327 Lele30g0967 30 13276261 13277406 CCT
Lele10g0970 10 20934551 20938100 Lele30g0967 30 13276261 13277406 CCT
Lele30g0967 30 13276261 13277406 Lele31g1106 31 17791627 17792820 hybridization
Lele30g0967 30 13276261 13277406 Lele32g0419 32 2642419 2643603 hybridization