Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0965 ATGAAGCTACGTTCTCGTAGGCGACTTCCTCCTCCTAATATCGATGTAACCAGAAATGAACAACCATCTAATGATGCCTCGGAAGAAGCTAAAACTGCTAGCCATTGTGGCAATCATGCAAATGAAGTCTCTTCAGGTTCACATTCCAGTTTTGAAGATGAAGCTTTGAACTCCTCTCCTGACTTAAATGAAGAACCTACTTCAAGCTTTTGCCCTTCTGATGAGGTAGAAGACAACTCTGATTCATCCAATAGCTGGACTACTCCGCTTAGAAAGAGAAGAGGAAGGAAAAGGAGAAAACTCAGCTCTAAAAATGGAGAGTCCAGTCAGGACATGGGAGAGTTGGAGGATGGAGACAATGATGGCTCCCCAAGAGTTCAGCAGCAACCAATTGACCATGATTTGGTTAGCCAGAGGAAGAAGAAAAAAAGAAAAAGAGGAAAAAAAGATCCAATGCCAGTGTGGTTGTGGAAGGTGTGGGAAGAGCAGAATGAGAGATGGATCGATGAGAATTTATCAGAAGATGTTGACTTGGATCATCAGAATGAAGTAATGAATGAAACTGCTGAGGCTTCCTCTGACCTTACTATGCCGTTACTAAGATACCAAAAGGAATGGCTAGCATGGGCTTTGAAACAGGAGAATTCTGAAATTAGGGGGGGTATTCTTGCAGACGAAATGGGGATGGGAAAGACTATTCAAGCAATTGCTCTTGCCCTTGCCCAACGTGAAATCTGGCAAATGGTTTGTGAACCAGATGAAACATCCTCTTTACCAGGTTCATCTACAATTTTGCCTAGGATCAAAGGAACGCTTATTATTTGTCCTGTGGTTGCTGTCACTCAGTGGGTTAGTGAGATTGATAGGTTTACTCTAAAAGGAAGCACCAAGGTTCTAATTTATCATGGGGCCAATAGAGGGAAGGGTAGGGAAAAGTTCTCAGATTATGATTTTGTAATAACTACATACTCTATTGTCGAAGCAGAGTACAGAAAGTATATGATGCCTCCTAAGGAGAAGTGCCCATATTGTGGCAAATCTTTTAGCCACACGAACTTATCTGTTCACCAGAGATATTATTGTGGGCCTGGTGCTGAGAGAACAGAAAAACAATCGAAGCAATTCAAGAAAAAGAAAAGAGAAGTTAATATAAAGGAGAAAATTCAGATGAACAGTGGACCAGATAATTCAGACGCCACACACAAGGGGAAGTCCCTTTTACATATTGTAAAGTGGCAGCGGATCATTTTGGATGAGGCACACTATATTAAATCTAGACAATGTAACACTGCAAAAGCAATTCTTGCTCTAGAGTCTTCCTATAGATGGGCTTTAAGTGGAACTCCGCTTCAGAATCGTGTGGGAGAGCTGTATTCTCTGATACGTTTCCTGCAAATAGTTCCTTATTCCTATTACTTGTGCAAGGACTGTGATTGCAGGGTTCTTGATCATAGTTCTGGGGAATGTTCATATTGCCAGCACAGTTCTGTCAGGCATTTCTGTTGGTGGAATAAATATGTAGCCACGCCTATTCAATTATATGGAAACATTGATACTGGAAAGAGAGCAATGATATTGCTTAAACACAAGGTTTTAAAAAGTATAATATTAAGGCGTACTAAAGTTGGCCGGGCTGCTGATCTCGCACTTCCACCTAGAATTGTTTCATTGAGAAAGGATGGCTTGGATATAAAAGAGCAAGACTATTATGAATCATTATACAATGAGAGTCAGGCACAGTTTAATACATATGTGGAATCAGATACTTTGACGAATAATTATGCTCATATATTTGACCTCCTCACCAGACTTAGGCAGGCTGTTGATCATCCTTATCTTGTGGTATATTCTCAAGCTGCATCATTAAAAGCTGGGCTTGAGGTTAGCAATGACAATGTTGAACAAGCATGTGGCCTTTGTCATGACCCAGTAGACGATCCTGTGGTTACCTCATGTGAACACATCTTTTGTAAGGCATGCTTGATAGACTTCTCTGCTTCCTTCGGGCGAGTGTCATGCCCTTCGTGCTCCAAGTTACTTACTGTTGATTTAACTTCAAATAAGGATGTCGGGAATCAGTCTAGAAAAACAACAATAAAGGGTTTCAGATCCTCAAGCATTTTAAATAGAATTCAGCTTGAGAACTTTCAAACAAGTACTAAAATAGAGGCATTGAGAGAAGAAATTCGATTCATGGTAGAAAGGGATGGCTCTGCAAAAGGGATTGTTTTTAGCCAGTTCACTTCATTCTTGGATCTCATAAACTACTCCCTGCTCAAGTCTGGTGTGTCTCGTGTTCAACTGAATGGAAGCATGTCATTAGCTGCCCGGGATGCAGCCATTAAGAGATTTACTGATGATCCAGAATGCAAAATTTTTCTCATGAGCTTGAAAGCTGGTGGCGTTGCCCTCAATTTAACCGTTGCATCACATGTTTTCATTATGGACCCTTGGTGGAACCCAGCCGTAGAGCGTCAGGCTCAAGATAGAATTCACCGAATAGGGCAGTATAAACCAATCAGAATTGTCAGGTTTGTGATCGAGAACACTATTGAGGAGAGGATTTTGAAGCTGCAAAAGAAGAAGGAGCTAATATTTGAAGGGACTGTTGGTGGCTCTGCCGAGGCTCTGGGCAAACTCACGGAGGCAGACATGAGATTTCTGTTCGTTACCTGA 2676 0.4141 MKLRSRRRLPPPNIDVTRNEQPSNDASEEAKTASHCGNHANEVSSGSHSSFEDEALNSSPDLNEEPTSSFCPSDEVEDNSDSSNSWTTPLRKRRGRKRRKLSSKNGESSQDMGELEDGDNDGSPRVQQQPIDHDLVSQRKKKKRKRGKKDPMPVWLWKVWEEQNERWIDENLSEDVDLDHQNEVMNETAEASSDLTMPLLRYQKEWLAWALKQENSEIRGGILADEMGMGKTIQAIALALAQREIWQMVCEPDETSSLPGSSTILPRIKGTLIICPVVAVTQWVSEIDRFTLKGSTKVLIYHGANRGKGREKFSDYDFVITTYSIVEAEYRKYMMPPKEKCPYCGKSFSHTNLSVHQRYYCGPGAERTEKQSKQFKKKKREVNIKEKIQMNSGPDNSDATHKGKSLLHIVKWQRIILDEAHYIKSRQCNTAKAILALESSYRWALSGTPLQNRVGELYSLIRFLQIVPYSYYLCKDCDCRVLDHSSGECSYCQHSSVRHFCWWNKYVATPIQLYGNIDTGKRAMILLKHKVLKSIILRRTKVGRAADLALPPRIVSLRKDGLDIKEQDYYESLYNESQAQFNTYVESDTLTNNYAHIFDLLTRLRQAVDHPYLVVYSQAASLKAGLEVSNDNVEQACGLCHDPVDDPVVTSCEHIFCKACLIDFSASFGRVSCPSCSKLLTVDLTSNKDVGNQSRKTTIKGFRSSSILNRIQLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLLKSGVSRVQLNGSMSLAARDAAIKRFTDDPECKIFLMSLKAGGVALNLTVASHVFIMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQKKKELIFEGTVGGSAEALGKLTEADMRFLFVT 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0965 891 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 36 889 - -
Lele30g0965 891 SUPERFAMILY RING/U-box 634 681 - -
Lele30g0965 891 Coils Coil 708 728 - -
Lele30g0965 891 MobiDBLite consensus disorder prediction 16 31 - -
Lele30g0965 891 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 889 IPR027417 -
Lele30g0965 891 SMART ring_2 637 676 IPR001841 -
Lele30g0965 891 Gene3D - 561 889 IPR027417 -
Lele30g0965 891 ProSiteProfiles Zinc finger RING-type profile. 637 677 IPR001841 -
Lele30g0965 891 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 212 467 IPR014001 -
Lele30g0965 891 SMART ultradead3 195 472 IPR014001 -
Lele30g0965 891 Gene3D - 201 341 IPR038718 -
Lele30g0965 891 Gene3D - 345 558 IPR038718 -
Lele30g0965 891 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 631 702 IPR013083 -
Lele30g0965 891 ProSitePatterns Zinc finger RING-type signature. 652 661 IPR017907 -
Lele30g0965 891 SMART helicmild6 752 835 IPR001650 -
Lele30g0965 891 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 539 IPR027417 -
Lele30g0965 891 Pfam Zinc finger, C3HC4 type (RING finger) 637 676 IPR018957 GO:0046872
Lele30g0965 891 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 717 881 IPR001650 -
Lele30g0965 891 Coils Coil 365 385 - -
Lele30g0965 891 CDD SF2_C_SNF 719 846 - -
Lele30g0965 891 Pfam SNF2-related domain 213 614 IPR000330 GO:0005524|GO:0140658
Lele30g0965 891 Pfam Helicase conserved C-terminal domain 721 835 IPR001650 -
Lele30g0965 891 MobiDBLite consensus disorder prediction 1 149 - -
Lele30g0965 891 MobiDBLite consensus disorder prediction 37 89 - -
Lele30g0965 891 CDD DEXDc_SHPRH-like 199 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0965 Lele-ChrLele30 13252881 13263814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0965 140 891 RAD5 or RAD16-like Gene Family AT1G05120 66.753 0.0 1067
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele30g0965 SNF2_N 3.4e-48 CL0023