Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0946 ATGCCGGCCGGGATTATGATTCCGGCGAGAAACATGCCCTCCAAGATCGGAAGGAACAACAACGTTGGTGCTGCGTTTGGATCATCCTCAGGCCTTTCTCTTGGTCAGCAGCCAAACATGATAGAAGGTCAGCTCCTCTCAGCACTGCACATGGCTCCAAACACATCGGAGAGCGACATTCCTCAAATCGGCCGAGACGACGATTTCGACACCGCCACCAAGTCCGGCAGCGAAAATCAGGAAAATGGCGCCTCCGGTGACGACCAAGACCAACGCCCCAAGAAGAAGCGTTACCACCGCCACACCCAGCACCAGATCCAGGAAATGGAAGCTTTCTTCAAAGAGTGCCCTCATCCCGATGACAAGCAAAGGAAGGAGCTGAGTCGTGAATTAGGGTTAGAGCCATTGCAGGTGAAGTTCTGGTTCCAAAACAAGCGCACCCAGATGAAGAACCAACATGAGCGGAATGAGAACTCACACCTTAAAGCCGAAAACGAAAAGCTTCGGGCAGATAACATGAGGTACAGAGAAGCTCTAAGCAATTCCTCTTGTCCTAACTGTGGTGGACCAACCGCTATAGGTGAAATGTCCTTCGATGAACATCATTTGAGACTCGAAAATGCCCGCCTTAGAGAAGAGATTGATAGAATTTCAGCAATTGCGGCTAAGTACGTAGGGAAGCCAGTGGTGAACTATCCTCTACTTTCTCCATCTTCGGTTCCACCTCGTCCTTTAGAGCTAGGGGTTGGTGGTGGTTATGGTGGCCAGGCGGGGATTGGCGGCGGCGCTGGTGGGGACATGTATGGAGGAGCCGGAGATCTCTTGAGGTCGATAAGTGGACTGACGGAAGCTGATAAGCCGATGATCATAGAGCTTGCAGTTGCGGCGATGGAAGAACTGGTGAGAATGGCTCAGATGGGGGAGCCTCTTTGGATGACAACCCTCGATGGCTCCACCACTGTGCTGAATGAAGACGAGTACATGAGATCTTTTCCTCGAGGAATTGGCCCTAAACCCATCGGCTTGAAATGCGAAGCTTCTAGAGAAACTGCAGTCGTCATCATGAATCACATCAACCTCGTAGAGATTCTCATGGATGTGAACCAGTGGTCGACAGTGTTCTCTGGGATAGTGTCAAGAGCAATGACTATGGAAGTACTATCAACGGGGGTAGCTGGGAACTACAACGGTGCCTTGCAAGTGATGACAGCAGAGTTGCAAGTGCCTTCACCTCTAGTGCCAACTCGAGAGAGTTATTTCGTGAGGTATTGCAAGCAGCACGTTGACGGGACATGGGCCGTAGTGGACGTGTCTCTGGACCATCTCAGCACTGCTCCTGTCAAATGTAGAAGACGACCTTCTGGTTGCTTAATCCAAGAAATGCCCAATGGCTATTCCAAGGTGACGTGGATCGAACATGTCGAGGTGGATGATGGAGGTGTACATAATCTATACAAGCAGCTTGTTAGTTCTGGCCATGCATTTGGTGCAAAACGATGGGTTGCCACCTTAGATCGACAGTGCGAAAGGCTTGCTAGTGCCATGGCTTCCAACATTCCCACCGGTGATGTTGGAGTGATAACAAACCAAGACGGGAGGAGGAGTATGTTGAAGCTGGCGGAGAGAATGGTGATAAGCTTCTGCGCCGGAGTGAGCGCTTCCACTGCTCACACATGGACAACACTCTCTGGAACCGGGGCCGACGATGTTCGAGTCATGACCCGAAAGAGCGTCGACGACCCGGGAAGACCTCCCGGCATTGTTCTCAGCGCGGCAACCTCTTTTTGGCTTCCTGTTCCGCCCACGCGAGTCTTTGATTTCCTCCGTGATGAAAACTCCAGAAGCGAGTGGGATATTCTTTCCAACGGTGGTGTGGTCCAAGAAATGGCACACATAGCTAACGGACGAGATACAGGGAACTGCGTGTCCCTGCTTCGCGTGAATAGTGCAAATTCGAGCCAAAGCAATATGTTGATACTGCAAGAGAGCTGCACAGACACAACGAGTTCGTTCGTGATATATGCTCCGGTGGATATAGTAGCCATGAACGTGGTTCTGAATGGAGGGGATCCTGATTACGTGGCACTTCTTCCTTCGGGGTTTGCTATCTTGCCCGACGGTACCTCTGCTCATGGAGGAGGTGGCATTGCTGAAACAGGCCACGGTGGATCCCTGTTGACCGTTGCTTTTCAAATCTTGGTTGATTCCGTGCCCACTGCTAAGCTCTCTCTTGGATCTGTCGCAACTGTCAATAACCTCATTGCATGCACTGTGGAGCGAATTAAGGCTTCTTTATCTTGTGAAGCTGCTTGA 2313 0.511 MPAGIMIPARNMPSKIGRNNNVGAAFGSSSGLSLGQQPNMIEGQLLSALHMAPNTSESDIPQIGRDDDFDTATKSGSENQENGASGDDQDQRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERNENSHLKAENEKLRADNMRYREALSNSSCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPSSVPPRPLELGVGGGYGGQAGIGGGAGGDMYGGAGDLLRSISGLTEADKPMIIELAVAAMEELVRMAQMGEPLWMTTLDGSTTVLNEDEYMRSFPRGIGPKPIGLKCEASRETAVVIMNHINLVEILMDVNQWSTVFSGIVSRAMTMEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHVDGTWAVVDVSLDHLSTAPVKCRRRPSGCLIQEMPNGYSKVTWIEHVEVDDGGVHNLYKQLVSSGHAFGAKRWVATLDRQCERLASAMASNIPTGDVGVITNQDGRRSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPTRVFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDTTSSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTSAHGGGGIAETGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCEAA 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0946 770 CDD homeodomain 95 153 IPR001356 GO:0003677
Lele30g0946 770 Pfam Homeodomain 95 151 IPR001356 GO:0003677
Lele30g0946 770 FunFam Homeobox-leucine zipper protein HDG1 80 168 - -
Lele30g0946 770 CDD START_ArGLABRA2_like 286 509 - -
Lele30g0946 770 SUPERFAMILY Bet v1-like 283 512 - -
Lele30g0946 770 MobiDBLite consensus disorder prediction 55 103 - -
Lele30g0946 770 Gene3D - 80 169 - -
Lele30g0946 770 ProSiteProfiles START domain profile. 282 513 IPR002913 GO:0008289
Lele30g0946 770 SMART HOX_1 93 156 IPR001356 GO:0003677
Lele30g0946 770 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677
Lele30g0946 770 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 91 765 IPR042160 -
Lele30g0946 770 SUPERFAMILY Homeodomain-like 84 152 IPR009057 -
Lele30g0946 770 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Lele30g0946 770 Pfam START domain 292 510 IPR002913 GO:0008289
Lele30g0946 770 Coils Coil 144 178 - -
Lele30g0946 770 Gene3D - 359 507 IPR023393 -
Lele30g0946 770 SMART START_1 291 510 IPR002913 GO:0008289
Lele30g0946 770 SUPERFAMILY Bet v1-like 530 762 - -
Lele30g0946 770 FunFam Homeobox-leucine zipper protein GLABRA 2 291 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0946 Lele-ChrLele30 13115131 13119353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0946 37 770 Homeobox Transcription Factor Family AT1G05230 78.784 0.0 1155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele30g0946 START 3.2e-58 CL0209