Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele30g0943 | ATGGTCATCCTTCCCGACAAAATTCATTTGTTGGCTACAGTAATGGTCATCCTTCCCGACAAAGTGATATTGAGATGGGAACACAAGGGCCCAAGGAACAACTCTGATATGGGAATGGATGTTTTTAATAAGCAGATTGCAGAGGCTGATAAACAGGAAGCTAATGAGGAGTCCAAATCTGTCACAAAAGCTTCAGCTATGAAAGAATCTAGCCAAAAGACAAAAGCCTGGTTGCTTGAAGGGAACTGTTCCTTGACAAAAAGGTTTAAGGATCTAATGAAAGAGTTTCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTGGTGGAGAGAAGAGTTATTCCAGTAACGGGAACTAGACCAGATGATGAGGCAATTGACAACCTAATAGAAACAGGAAGCAGTGAGCAAATCTTTCAGAAGGCTATGCTAGAAACAGGACTAGGACAGGTGTTAAATACGGTGGAAGAAATTCAGGAGCGACACGATGCTGTGAAGGAAATCGAGAAAAAGCTTCTTGATTTACACCAGATTTACCTTGACATGGCAGTGTTGTTTGATACTCAAGGAGAAATTCTAGATAACATTGAAAGCCAGGTCAACAATGCAGTCGATCATGTCCGAGGGACATCTGTGCTACAAAATGCTAAGAAACTGCAGAAGAACTCTCGAAAATGGATGTGCTTTGCCATCATTTTACTATTATTGATAGTAGCTATCATGGAAGAAGTAACCCGAAGAGAGAAGTAA | 756 | 0.4061 | MVILPDKIHLLATVMVILPDKVILRWEHKGPRNNSDMGMDVFNKQIAEADKQEANEESKSVTKASAMKESSQKTKAWLLEGNCSLTKRFKDLMKEFQTLRQRIQDEYREVVERRVIPVTGTRPDDEAIDNLIETGSSEQIFQKAMLETGLGQVLNTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLFDTQGEILDNIESQVNNAVDHVRGTSVLQNAKKLQKNSRKWMCFAIILLLLIVAIMEEVTRREK | 251 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele30g0943 | 251 | Coils | Coil | 89 | 113 | - | - | |
| Lele30g0943 | 251 | Pfam | Syntaxin | 46 | 192 | IPR006011 | GO:0016020 | |
| Lele30g0943 | 251 | FunFam | Syntaxin 132 | 150 | 246 | - | - | |
| Lele30g0943 | 251 | CDD | SNARE_syntaxin1-like | 156 | 216 | - | - | |
| Lele30g0943 | 251 | Coils | Coil | 44 | 64 | - | - | |
| Lele30g0943 | 251 | Pfam | SNARE domain | 193 | 242 | IPR000727 | - | |
| Lele30g0943 | 251 | PANTHER | SYNTAXIN | 55 | 237 | IPR045242 | - | |
| Lele30g0943 | 251 | SMART | tSNARE_6 | 152 | 218 | IPR000727 | - | |
| Lele30g0943 | 251 | Gene3D | - | 31 | 187 | - | - | |
| Lele30g0943 | 251 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 157 | 213 | IPR000727 | - | |
| Lele30g0943 | 251 | SUPERFAMILY | t-snare proteins | 83 | 210 | IPR010989 | GO:0016020|GO:0016192 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele30g0943 | Lele-ChrLele30 | 13085376 | 13088403 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele30g0943 | 30 | 230 | SNARE and Associated Proteins | AT3G03800 | 48.425 | 5.23e-70 | 216 |